Structure #60825
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr14 |
Strand | - |
Position | 53,419,195 - 53,419,312 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 72.96 |
Columns | 120 |
Mean single MFE | -32.72 |
Consensus MFE | -18.88 |
Combinations/base pair | 34 / 26 = 1.31 |
SCI | 0.58 |
z-score | -1.61 |
RNA class probability | 0.670695 |
This structure is part of cluster 31319
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 72.96 Mean single sequence MFE: -32.72 Consensus MFE: -18.88 Energy contribution: -20.92 Covariance contribution: 2.04 Mean z-score: -1.61 Structure conservation index: 0.58 SVM decision value: 0.28 SVM RNA-class probability: 0.670695 Prediction: RNA ###################################################################### >hg17.chr14/53419312-53419195 GUUACUUCUUCUGUGGUUAGGGCUAAAGGCAAAUGGGGUAACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACAUUAAGAAAGCAC ((((((((...(((..(((....)))..)))...))))))))....((((((...((.((((((......)))))).))...))))))............................. ( -25.60) >mm5.chr14/38971542-38971426 CUUGCUUCUUCUGUAGUGAGGAUGGAGGUUAAUGGGGUAACUUCAGAAUGUAUUGUCUCCCGUUACAUGAUGGGAGACAGAGAAGUCACACGGGUAUUUUGGCAUUAAGAAAGUGC ..((((...(((((.((((.....(((((((......)))))))........((((((((((((....)))))))))))).....)))))))))......))))............ ( -36.20) >rn3.chr15/22221447-22221338 CUCGCUUCUUCUGUGGUGAAGACGGAGGCUAAUGGGAGUAGCUCCAGAAUGUAUUGUCUCCCGUUAACACGAUGGGGGACGGAGAAGUCACACGGCGUUAAGACAGUGC ..((((((((.(((.(((..(((((((.(((.......)))))))........((((((((((((.....))))))))))))....))).))).)))..)))).)))). ( -37.40) >canFam1.chr8/32834636-32834531 GUUACUUCUUCUGAAGGCAAAUGGGGUAACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACGUUAAGAAAGCAC ((((((((...((....))...))))))))(((.((((((...((.((((((......)))))).))...))))))..(((..........)))...)))..... ( -23.30) >galGal2.chr5/55219298-55219182 GUCACUUCUUCUGUGCUGCGUCUGAAGGCACGCGGGGUAACCUCAGAAUUCAUUGUUUCCCCUGACACGAUGGGAAACAGCAAAUUCACACGGGUAUAUCCCACAGCGAGGAGCGC ....(((((((((((((((........))).))((((((((((..(((((..(((((((((..........)))))))))..)))))....)))).)))))))))).))))))... ( -41.10) >consensus GUUACUUCUUCUGUGGUGAGGA_UGAAGGCAAAUGGG_GUAACUUCAGAAUUUAUUGUCUCCCAUUA_CAUGAUGGGAAACAGAAAAUUCACACGGGUAU_UUUAACAUUAAGAAAGCGC ..........(((((.........((((..............)))).((((((.(((((((((((.......))))))))))).)))))).)))))........................ (-18.88 = -20.92 + 2.04)