Structure #61162

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	+
Position	56,593,996 - 56,594,068
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.48
Columns	72
Mean single MFE	-24.05
Consensus MFE	-18.46
Combinations/base pair	31 / 23 = 1.35
SCI	0.77
z-score	-2.31
RNA class probability	0.973024

This structure is part of cluster 31534

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 72
 Columns: 72
 Strand: +
 Mean pairwise identity:  81.48
 Mean single sequence MFE: -24.05
 Consensus MFE: -18.46
 Energy contribution: -17.90
 Covariance contribution:  -0.56
 Mean z-score:  -2.31
 Structure conservation index:   0.77
 SVM decision value:   1.70
 SVM RNA-class probability: 0.973024
 Prediction: RNA

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>hg17.chr14/56593996-56594068
CAUUGCCAAUUAGCUAGGGCCUCCCCUGACCAGUUCCAACCCACGAGCUGGGUUAGGACUGCAACUUUGACC
..((((...((((((((((....))))).(((((((........))))))))))))....))))........ ( -21.30)
>mm5.chr14/41551188-41551260
CAUUGCCAAUCAGCUGGGGCUGCCCCUAGCUGGUUCCAACCCACCAGCUGGGUCAGGAAUGCAACUUUGACC
..((((....(((((((((....)))))))))(((((.(((((.....)))))..)))))))))........ ( -30.00)
>rn3.chr15/24871215-24871287
CAUUGCCAAUCAGCUGGGGCCUCCCCUAACCGGUUCCAACCCACCAGCUGGGUCAGGAAUGCAACUUUGACC
..........(((((((((.....((.....)).......)).)))))))(((((((........))))))) ( -20.70)
>canFam1.chr8/35571395-35571466
CUUGCCAAUUAGCCAGGGCCACCUCUGAUUAGUUCUGACCCAUCAGUCGGGUUGGGAAGGCAAUUCUGACC
.(((((((((((..(((....)))))))))..(((..((((.......))))..))).)))))........ ( -24.20)
>consensus
CAUUGCCAAUCAGCUAGGGCCUCCCCUAACCAGUUCCAACCCACCAGCUGGGUCAGGAAUGCAACUUUGACC
..((((..(((((.(((((....))))).)))))(((((((((.....)))))).)))..))))........ (-18.46 = -17.90 +  -0.56) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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