Structure #61163

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	-
Position	56,593,996 - 56,594,068
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.48
Columns	72
Mean single MFE	-26.23
Consensus MFE	-23.14
Combinations/base pair	29 / 22 = 1.32
SCI	0.88
z-score	-1.73
RNA class probability	0.877635

This structure is part of cluster 31534

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 72
 Columns: 72
 Strand: +
 Mean pairwise identity:  81.48
 Mean single sequence MFE: -26.23
 Consensus MFE: -23.14
 Energy contribution: -23.20
 Covariance contribution:   0.06
 Mean z-score:  -1.73
 Structure conservation index:   0.88
 SVM decision value:   0.90
 SVM RNA-class probability: 0.877635
 Prediction: RNA

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>hg17.chr14/56594068-56593996
GGUCAAAGUUGCAGUCCUAACCCAGCUCGUGGGUUGGAACUGGUCAGGGGAGGCCCUAGCUAAUUGGCAAUG
.(((((.....((((.((((((((.....)))))))).))))(..((((....))))..)...))))).... ( -27.70)
>mm5.chr14/41551260-41551188
GGUCAAAGUUGCAUUCCUGACCCAGCUGGUGGGUUGGAACCAGCUAGGGGCAGCCCCAGCUGAUUGGCAAUG
.......(((((.((((.((((((.....)))))))))).(((((.((((...)))))))))....))))). ( -30.30)
>rn3.chr15/24871287-24871215
GGUCAAAGUUGCAUUCCUGACCCAGCUGGUGGGUUGGAACCGGUUAGGGGAGGCCCCAGCUGAUUGGCAAUG
.......(((((.((((.((((((.....)))))))))).(((((.((((...)))))))))....))))). ( -27.20)
>canFam1.chr8/35571466-35571395
GGUCAGAAUUGCCUUCCCAACCCGACUGAUGGGUCAGAACUAAUCAGAGGUGGCCCUGGCUAAUUGGCAAG
.(((((....(((...(((.((...(((((.(((....))).))))).)))))....)))...)))))... ( -19.70)
>consensus
GGUCAAAGUUGCAUUCCUAACCCAGCUGGUGGGUUGGAACCAGUCAGGGGAGGCCCCAGCUAAUUGGCAAUG
.(((((..........((((((((.....))))))))...(((((((((....))))))))).))))).... (-23.14 = -23.20 +   0.06) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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