Structure #61727
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | - |
| Position | 64,475,622 - 64,475,763 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 80.21 |
| Columns | 147 |
| Mean single MFE | -55.99 |
| Consensus MFE | -40.79 |
| Combinations/base pair | 53 / 39 = 1.36 |
| SCI | 0.73 |
| z-score | -3.08 |
| RNA class probability | 0.998835 |
This structure is part of cluster 31870
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 147 Columns: 147 Strand: + Mean pairwise identity: 80.21 Mean single sequence MFE: -55.99 Consensus MFE: -40.79 Energy contribution: -40.36 Covariance contribution: -0.44 Mean z-score: -3.08 Structure conservation index: 0.73 SVM decision value: 3.25 SVM RNA-class probability: 0.998835 Prediction: RNA ###################################################################### >hg17.chr14/64475763-64475622 CUCCAAGACUUGGGUAAGCUCUGGGCCUUCACAGAAUGAUGGCACCUUCCUAAACCCUCAUGGGUGGUGUCUGAGAGGCGUGAAGGGCCUGGAGCCACUCUGCUAGAAGAGACCAAUAAAGGGCAGGUGUGGAAACGGCCA ..((.....((((....((((..(((((((((........((((((.......((((....))))))))))........))))).))))..))))..((((......)))).)))).....))..(((.((....))))). ( -53.40) >mm5.chr12/72081861-72081718 CUCUAAGUCUGGGGUAGGUUCUGGGCCUUCACAGAAUGAUGGCAUCUUCCUAAACCCUUCUGGGAGAUGUCUGAGAAGUUGUGAAGGGUCCAGAGCCAGUCUGCUUUAGAGUCCAAUAAAGUGUAGGUGUGGCAAUGGCCUGG ((((((((...(((..((((((((((((((((((......((((((((((...........)))))))))).......))))))).)))))))))))..))))).))))))...................(((....)))... ( -55.92) >rn3.chr6/99376013-99375873 CUCUAAGUCUGGGGUAGGUGCUAGGCCUUCUUCACAGAAUGAUGGCAUCUUCCUAAACCCUUCUGGGGGAUGUCUGAGACGUUGUGAAGGGCCCAGAGCCAGCUCGGUUUAGAGUCCAAUAAAGGGUAGGAAUGACCUGG (((((((.(((((.(.(((.((.((((..((((((((......((((((((((...........)))))))))).......)))))))))))).)).)))).))))))))))))(((......)))((((.....)))). ( -54.22) >canFam1.chr8/42227425-42227286 CUCCAAGACUUGGGUGGCUCUGGGCCUUCACAGAAUGAUGGCACCUUCCUAAAUAGUAUGGGCGGUGUCUGAGAAGUGUGAAGGGCUCAGAGCCAGCCUGCUAGAUGAGUCCAAUAAAGGGCAGGUAUGGAAAUGGCCA .((((..((((((.((((((((((((((((((.......((((((.(((..........))).)))))).......)))))).)))))))))))).))..........((((......)))))))).))))........ ( -60.44) >consensus CUCCAAGACUGGGGUAGGCUCUGGGCCUUC___ACAGAAUGAUGGCACCUUCCUAAACCCUUAUGGGAGAUGUCUGAGAAGU_GUGAAGGGCCCAGAGCCAGCCUGCUAGA_GAGUCCAAUAAAGGGCAGGUGUGGAAAUGGCC__A (((........((((.(((((((((((((....((((......((((((((((...........)))))))))).......))))..))))))))))))).)))).......)))..........(((..((......)).)))... (-40.79 = -40.36 + -0.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
