Structure #62520

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	+
Position	72,418,874 - 72,418,991
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.79
Columns	120
Mean single MFE	-40.88
Consensus MFE	-31.59
Combinations/base pair	48 / 35 = 1.37
SCI	0.77
z-score	-3.47
RNA class probability	0.999146

This structure is part of cluster 32314

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.79
 Mean single sequence MFE: -40.88
 Consensus MFE: -31.59
 Energy contribution: -30.84
 Covariance contribution:  -0.75
 Mean z-score:  -3.47
 Structure conservation index:   0.77
 SVM decision value:   3.40
 SVM RNA-class probability: 0.999146
 Prediction: RNA

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>hg17.chr14/72418874-72418991
CCCUUCUCUAUUCUAAGGGGAAACCCUCCAGUUCUUCCUUGAUGAAAAUAUAAUCAAGAGAAAUGAUUGGGGGAAAGUGUUUUUUUCUCCUCCAUAGAACUGGGAUUGGAAGGGGAG
(((((.((((.((..((((....))))((((((((((((((((.........)))))).)))(((...(((((((((....)))))))))..))).))))))))).))))))))).. ( -46.90)
>mm5.chr12/78788892-78789008
CCCUUCUGGAUUCUGAGGGAACCCCUCAGCCCUUCCCUGAUGAAAACAUAAUCAAAGGAAAUGAUUGGAGGGACGCGUUUUUCUCCUCCAUAGAACUGGAAUCAGAAGGGGGGGGG
.((....))...(((((((...)))))))(((((((((..(((......(((((.......)))))((((..(......)..))))((((......)))).)))..))))))))). ( -43.40)
>rn3.chr6/107433267-107433380
CCCUUCUGGAUUCCGAGGGAAACCCUCAGUCUUUUUCCUGAUGAAAACAUAAUCAAAGAAAAUGAUUGGGGGAAGUGUUUUUCUCCUCCACAGAAUUUGGAUCGGAAAGGGGG
((((((..(((((.(((((((((((((((((.(((((.((((.........))))..))))).))))))))).......)))).))))....)))))..))......)))).. ( -37.51)
>canFam1.chr8/49176648-49176762
CCCUUCUCUAUUCUAAGGGAACCCUCCAGCUCUUCCUUGAUGGAAAUAUAAUCAAGAGAAAUGAUUGGGGGAAAGUGUUUUUUCUCCUCCAUAGAAUUGGGAUUGGAAGGGGAG
(((((.........)))))..((((((((..((......(((((....((((((.......))))))((((((((....)))))))))))))......))..)))).))))... ( -35.70)
>consensus
CCCUUCUCGAUUCUAAGGG__AACCCUCCAGCUCUUCCCUGAUGAAAACAUAAUCAAAAGAAAUGAUUGGGGGAAAGUG__UUUUUCUCCUCCAUAGAACUGGGAUCGGAA___GGGGAG
((((......(((((((((....))).((((.(((((((((((.........)))))))))......(((((((.............)))))))..)).))))..))))))...)))).. (-31.59 = -30.84 +  -0.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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