Structure #62522

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	-
Position	72,418,874 - 72,418,991
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.79
Columns	120
Mean single MFE	-35.97
Consensus MFE	-23.33
Combinations/base pair	44 / 36 = 1.22
SCI	0.65
z-score	-3.33
RNA class probability	0.996357

This structure is part of cluster 32314

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.79
 Mean single sequence MFE: -35.98
 Consensus MFE: -23.33
 Energy contribution: -23.58
 Covariance contribution:   0.25
 Mean z-score:  -3.33
 Structure conservation index:   0.65
 SVM decision value:   2.69
 SVM RNA-class probability: 0.996357
 Prediction: RNA

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>hg17.chr14/72418991-72418874
CUCCCCUUCCAAUCCCAGUUCUAUGGAGGAGAAAAAAACACUUUCCCCCAAUCAUUUCUCUUGAUUAUAUUUUCAUCAAGGAAGAACUGGAGGGUUUCCCCUUAGAAUAGAGAAGGG
...(((((((....((((((((.(((.(((((.........))))).)))......((.((((((.(.....).))))))))))))))))((((....)))).......).)))))) ( -37.80)
>mm5.chr12/78789008-78788892
CCCCCCCCCUUCUGAUUCCAGUUCUAUGGAGGAGAAAAACGCGUCCCUCCAAUCAUUUCCUUUGAUUAUGUUUUCAUCAGGGAAGGGCUGAGGGGUUCCCUCAGAAUCCAGAAGGG
......((((((((((((.((((((.((((((.((........)))))))).....(((((.(((........)))..)))))))))))(((((...))))).)))).)))))))) ( -44.00)
>rn3.chr6/107433380-107433267
CCCCCUUUCCGAUCCAAAUUCUGUGGAGGAGAAAAACACUUCCCCCAAUCAUUUUCUUUGAUUAUGUUUUCAUCAGGAAAAAGACUGAGGGUUUCCCUCGGAAUCCAGAAGGG
..((((((..(((((........(((.((((........)))).))).((.((((((((((........)))..))))))).))..(((((...))))))).)))..)))))) ( -31.30)
>canFam1.chr8/49176762-49176648
CUCCCCUUCCAAUCCCAAUUCUAUGGAGGAGAAAAAACACUUUCCCCCAAUCAUUUCUCUUGAUUAUAUUUCCAUCAAGGAAGAGCUGGAGGGUUCCCUUAGAAUAGAGAAGGG
...(((((((....(((.((((.(((.(((((........))))).)))......((.((((((.........)))))))))))).)))(((....))).......).)))))) ( -30.80)
>consensus
CCCCCC___UUCCAAUCCCAAUUCUAUGGAGGAGAAAAA__CACUUUCCCCCAAUCAUUUCCCUUGAUUAUAUUUUCAUCAAGGAAGAGCUGGAGGGUU__CCCUCAGAAUACAGAAGGG
..(((....((((((..((((((((.(((.(((((.........))))).)))......(((.(((((.........)))))))))))))))).(((....))))))))).......))) (-23.33 = -23.58 +   0.25) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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