Structure #63410
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | + |
| Position | 80,738,794 - 80,738,933 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 89.3 |
| Columns | 144 |
| Mean single MFE | -37.97 |
| Consensus MFE | -32.73 |
| Combinations/base pair | 41 / 40 = 1.02 |
| SCI | 0.86 |
| z-score | -4.42 |
| RNA class probability | 0.991133 |
This structure is part of cluster 32842
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 144 Columns: 144 Strand: + Mean pairwise identity: 89.30 Mean single sequence MFE: -37.96 Consensus MFE: -32.73 Energy contribution: -35.48 Covariance contribution: 2.75 Mean z-score: -4.42 Structure conservation index: 0.86 SVM decision value: 2.25 SVM RNA-class probability: 0.991133 Prediction: RNA ###################################################################### >hg17.chr14/80738794-80738933 UGUUUGAUUCCGCAAAUUUCAGAGAACAGAUAACUCCAUUAUCCUAAUAUUCUCUGAGUGAAGAAAAUCAAAUUUUAAUUUAUGAUGACCUAAAAUCCUAAUGCCAGGUCUGAAGGCAACAGGAAGAACAGUCAUCAAA .((((((((........(((((((((..(((((.....)))))......))))))))).......)))))))).........(((((((......((((..((((.........))))..))))......))))))).. ( -33.96) >mm5.chr12/86178031-86178173 UGUUUGACCCCGCAAAUUUCAGAGAACACAUAGAUAAACCCAAUAUCUUGAUAUUCUCUGAGUGAAAAAAGUCAAUUUUAAUUUAUGAUGACUUAAAAUCCUAGUGCCAUGCCUAUAGGCAACAGGAGGAACAGCCAUCAAA ...(((((.........(((((((((.....(((((.......))))).....)))))))))........)))))..........(((((.((.....((((..((((.........))))..)))).....)).))))).. ( -34.83) >rn3.chr6/115196452-115196594 UGUUUGACCCCGCAAAUUUCAGAGAAUACACAGAUAAUCCCAUUAUCUUGAUAUUCUCUGAGUGAAAAAAAUCAAUUUUAAUUUAUGAUGACCUAAAAUCCUAGUGCCAUGCCUAUAGGCAAUAGGAGGAACAGUCAUCAAA ...((((..........(((((((((((((.(((((((...))))))))).))))))))))).........))))..........(((((((......(((((.((((.........)))).)))))......))))))).. ( -40.91) >canFam1.chr8/56468753-56468897 UGUUUGAUUCCGCAAAUUUCAGAGAAUAAACAGAUAAUCCCAUUAUCCUAAUAUUCUCUGAGUGAAGAAAAUCAAAUUUUAAUUUAUGAUGACCUAAAAUCCUAGUGCCAAGGCCUGAAGGCAAUAGGAGGAACAGUCAUCAAA .((((((((........(((((((((((....((((((...))))))....))))))))))).......)))))))).........(((((((......(((((.((((..........)))).)))))......))))))).. ( -42.16) >consensus UGUUUGACCCCGCAAAUUUCAGAGAACACACAGAUAAUCCCAUUAUCCUAAUAUUCUCUGAGUGAAAAAAAUC_AAUUUUAAUUUAUGAUGACCUAAAAUCCUAGUGCC_AGGCCUAAAGGCAACAGGAGGAACAGUCAUCAAA .(((((((.........(((((((((((...((((((.....))))))...)))))))))))........))))))).........(((((((......(((((.((((..........)))).)))))......))))))).. (-32.73 = -35.48 + 2.75)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
