Structure #64333
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | + |
| Position | 97,156,122 - 97,156,241 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 84 |
| Columns | 120 |
| Mean single MFE | -32.44 |
| Consensus MFE | -24.76 |
| Combinations/base pair | 35 / 26 = 1.35 |
| SCI | 0.76 |
| z-score | -2.43 |
| RNA class probability | 0.966121 |
This structure is part of cluster 33384
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.00 Mean single sequence MFE: -32.44 Consensus MFE: -24.76 Energy contribution: -24.80 Covariance contribution: 0.04 Mean z-score: -2.43 Structure conservation index: 0.76 SVM decision value: 1.59 SVM RNA-class probability: 0.966121 Prediction: RNA ###################################################################### >hg17.chr14/97156122-97156241 AGUAAUCACCAAAUCCUUAUUACUUGAAGCCUAUCUGCGCCAGGAGGCCCUUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAAUAGUCACGUCAAGGGAA ((((((............))))))....((((.((((...))))))))......((((((((((....(((.((((.(((((((....))))))).))))....))).)))))))))). ( -33.10) >canFam1.chr8/69139058-69139177 AGUAAUCACCAAAUCCUUAUUACUUGAAGCCCAUACGCGCCAGGAGGCCCUCUCUCCCUUGAUGAUCAAGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGAGAA ((((((............))))))....((......))....(((((.....)))))(((((((.....((.((((.(((((((....))))))).)))).)).....))))))).... ( -25.40) >mm5.chr12/101398120-101398239 AGUAAUCACCAAAUCCUUGUUGCUUGAAGCCCGUCCACCCCGGGAGGCCCCUUCUCCCUCCAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCGCAUCAAGGGAG .............((((((.(((.....(((.(..((....((((((.....))))))....))..).))).((((.(((((((....))))))).)))).......))).)))))).. ( -34.60) >rn3.chr6/130992710-130992829 AGUAAUCACCAAAUCCUUGCUCCUUGAAGCCCGUCCACCCCAGGAGGCCCUUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGGGAG ............................(((..(((......)))))).....(((((((((((.....((.((((.(((((((....))))))).)))).)).....))))))))))) ( -36.30) >galGal2.chr5/43819125-43819245 AGUAAUCACCAAAUCCUUAUUAUUUGAAGAAUAUACACACUAUGGGGUCUAUUUCUUCCUCAAUGAGCAUGUGUAACCCCCAUUAAUUUUAAUGGGAGUUAAGCGUGCACAUCAAGGGGA .............((((........((((((.(((.((........)).)))))))))((..(((.((((((.((((.(((((((....))))))).)))).)))))).)))..)))))) ( -32.80) >consensus AGUAAUCACCAAAUCCUUAUUACUUGAAGCCCAUCCACCCCAGGAGGCCC_UUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGGGAA ......................................(((....))).......((((((((((.....((.((((.(((((((....))))))).)))).)).....)))))))))). (-24.76 = -24.80 + 0.04)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
