Structure #64334
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | - |
| Position | 97,156,122 - 97,156,241 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 84 |
| Columns | 120 |
| Mean single MFE | -38.84 |
| Consensus MFE | -30.9 |
| Combinations/base pair | 46 / 34 = 1.35 |
| SCI | 0.8 |
| z-score | -2.63 |
| RNA class probability | 0.988351 |
This structure is part of cluster 33384
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.00 Mean single sequence MFE: -38.84 Consensus MFE: -30.90 Energy contribution: -29.82 Covariance contribution: -1.08 Mean z-score: -2.63 Structure conservation index: 0.80 SVM decision value: 2.12 SVM RNA-class probability: 0.988351 Prediction: RNA ###################################################################### >hg17.chr14/97156241-97156122 UUCCCUUGACGUGACUAUUUAACUCCUAUUAAAAUUAAUAGGGGUCAGGCCUGAUCAUCAAGGGAGAAAGGGCCUCCUGGCGCAGAUAGGCUUCAAGUAAUAAGGAUUUGGUGAUUACU (((((((((..((((..(((.((((((((((....)))))))))).)))...).))))))))))))...(.(((....))).)...(((...((((((.......))))))...))).. ( -32.60) >canFam1.chr8/69139177-69139058 UUCUCUUGAUGUGACUACUUAACUCCUAUUAAAAUUAAUAGGGGUCAGGCUUGAUCAUCAAGGGAGAGAGGGCCUCCUGGCGCGUAUGGGCUUCAAGUAAUAAGGAUUUGGUGAUUACU (((((((((((......(((.((((((((((....)))))))))).)))......)))))))))))...(.(((....))).)(((....(.((((((.......)))))).)..))). ( -37.00) >mm5.chr12/101398239-101398120 CUCCCUUGAUGCGACUACUUAACUCCUAUUAAAAUUAAUAGGGGUCAGGCCUGAUCAUGGAGGGAGAAGGGGCCUCCCGGGGUGGACGGGCUUCAAGCAACAAGGAUUUGGUGAUUACU ...(((((.(((.........((((((((((....)))))))))).(((((((.((((...(((((.......)))))...)))).)))))))...))).))))).............. ( -43.70) >rn3.chr6/130992829-130992710 CUCCCUUGAUGUGACUACUUAACUCCUAUUAAAAUUAAUAGGGGUCAGGCCUGAUCAUCAAGGGAGAAAGGGCCUCCUGGGGUGGACGGGCUUCAAGGAGCAAGGAUUUGGUGAUUACU (((((((((((......(((.((((((((((....)))))))))).)))......))))))))))).....((.(((((((((......))))).)))))).................. ( -43.40) >galGal2.chr5/43819245-43819125 UCCCCUUGAUGUGCACGCUUAACUCCCAUUAAAAUUAAUGGGGGUUACACAUGCUCAUUGAGGAAGAAAUAGACCCCAUAGUGUGUAUAUUCUUCAAAUAAUAAGGAUUUGGUGAUUACU (((.((..(((.(((.(..((((((((((((....))))))))))))..).))).)))..))(((((((((.((........)).))).)))))).........)))............. ( -37.50) >consensus UUCCCUUGAUGUGACUACUUAACUCCUAUUAAAAUUAAUAGGGGUCAGGCCUGAUCAUCAAGGGAGAAA_GGGCCUCCUGGCGUGGAUGGGCUUCAAGUAAUAAGGAUUUGGUGAUUACU (((((((((((......(((.((((((((((....)))))))))).)))......)))))))))))......(((.((((.......))))(((........))).....)))....... (-30.90 = -29.82 + -1.08)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
