Structure #64336
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | + |
| Position | 97,156,162 - 97,156,281 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 76.21 |
| Columns | 120 |
| Mean single MFE | -38.86 |
| Consensus MFE | -24 |
| Combinations/base pair | 37 / 27 = 1.37 |
| SCI | 0.62 |
| z-score | -2.77 |
| RNA class probability | 0.998312 |
This structure is part of cluster 33384
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.21 Mean single sequence MFE: -38.86 Consensus MFE: -24.00 Energy contribution: -23.48 Covariance contribution: -0.52 Mean z-score: -2.77 Structure conservation index: 0.62 SVM decision value: 3.06 SVM RNA-class probability: 0.998312 Prediction: RNA ###################################################################### >hg17.chr14/97156162-97156281 CAGGAGGCCCUUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAAUAGUCACGUCAAGGGAAGUAUCAGGGAGUGCAUUUGCAGCAAACCAACCCCAGAGAU ..((.((((((..(((((((((((....(((.((((.(((((((....))))))).))))....))).))))))))).))....))))..(((....))).........))))...... ( -36.70) >canFam1.chr8/69139098-69139215 CAGGAGGCCCUCUCUCCCUUGAUGAUCAAGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGAGAAGUAUCACUGAGUACUCGAAGCAAACCAACCCCGGAGAU .(((....))).((((((((((((.....((.((((.(((((((....))))))).)))).)).....))))))).((.((((......))))))................))))). ( -29.60) >mm5.chr12/101398160-101398279 CGGGAGGCCCCUUCUCCCUCCAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCGCAUCAAGGGAGGUAGCCGUGGGGACAGUCCCGGCGAGCCAACCCCUGAGAU ((((.((.....(((((((..(((.....((.((((.(((((((....))))))).)))).)).....)))..)))))))..(((((.(((.....))).))).))...)))))).... ( -45.10) >rn3.chr6/130992750-130992869 CAGGAGGCCCUUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGGGAGGUAGCCGUGGGUACAGUCCCAGAGAGCCAACCCCAGAGAU ..((.(((....((((((((((((.....((.((((.(((((((....))))))).)))).)).....))))))))))))..))).((((......))))...........))...... ( -44.40) >galGal2.chr5/43819165-43819281 UAUGGGGUCUAUUUCUUCCUCAAUGAGCAUGUGUAACCCCCAUUAAUUUUAAUGGGAGUUAAGCGUGCACAUCAAGGGGAGAAUUAACUCAUGAUUUUAAAACUGACUACUAAGAU ((((((...((.((((((((..(((.((((((.((((.(((((((....))))))).)))).)))))).)))...)))))))).)).))))))....................... ( -38.50) >consensus CAGGAGGCCC_UUUCUCCCUUGAUGAUCAGGCCUGACCCCUAUUAAUUUUAAUAGGAGUUAAGUAGUCACAUCAAGGGAAGUAUCAGUGAGUACAGUCCCAGCAAACCAACCCCAGAGAU ...((((....))))((((((((((.....((.((((.(((((((....))))))).)))).)).....))))))))))......................................... (-24.00 = -23.48 + -0.52)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
