Structure #64340

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	+
Position	97,086,678 - 97,086,798
Number of sequences	3
Organisms	human, dog, rat
Mean pairwise identity	90
Columns	120
Mean single MFE	-42.23
Consensus MFE	-36.09
Combinations/base pair	42 / 34 = 1.24
SCI	0.85
z-score	-2.14
RNA class probability	0.768723

This structure is part of cluster 33379

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 3
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.00
 Mean single sequence MFE: -42.23
 Consensus MFE: -36.09
 Energy contribution: -35.33
 Covariance contribution:  -0.76
 Mean z-score:  -2.14
 Structure conservation index:   0.85
 SVM decision value:   0.52
 SVM RNA-class probability: 0.768723
 Prediction: RNA

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>hg17.chr14/97086678-97086798
UUGCAGCAGGGCUGAACUUGGGCAUGAUUUUUGCAGUGAGAAGAAAGCCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGACUCUAGGCUGGAGCUGGGGUCAUUA
...(((((((.((...((((.(((.......)))..)))).....))))))))).((..(((((((((....))).))))))......))(((((((((((.(....)))))))))))). ( -43.80)
>canFam1.chr8/69072237-69072357
CUGCAGCAGGGCUGAACUUGGGUAUGAUUGUUGCAGCGAGAAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGGCUCUAGGCUGGAGCCAGGGUCAUUA
(((((((((.(((.......)))....))))))))).........((((.....)))).(((((((((....))).))))))........(((((((((.(((....)))))))))))). ( -45.30)
>rn3.chr6/130927415-130927535
UUGUAGCAGAGCUGAACUUGGACAUGACUGUUGCGGUAAGAAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGGACCCAGGGAAUGGAGGAUGGCUCUAGGCUGAAGCUGGGGUCAUUA
(((((((((...((........))...))))))))).........((((.....)))).((((((.((......))))))))........(((((((((((.(....)))))))))))). ( -37.60)
>consensus
UUGCAGCAGGGCUGAACUUGGGCAUGAUUGUUGCAGUGAGAAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGGCUCUAGGCUGGAGCUGGGGUCAUUA
(((((((((.(((.......)))....))))))))).........((((.....)))).((((((...........))))))........(((((((((.(((....)))))))))))). (-36.09 = -35.33 +  -0.76)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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