Structure #64342

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	+
Position	97,086,718 - 97,086,838
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	75
Columns	120
Mean single MFE	-48.15
Consensus MFE	-34.45
Combinations/base pair	50 / 39 = 1.28
SCI	0.72
z-score	-4.25
RNA class probability	0.999986

This structure is part of cluster 33379

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  75.00
 Mean single sequence MFE: -48.15
 Consensus MFE: -34.45
 Energy contribution: -35.20
 Covariance contribution:   0.75
 Mean z-score:  -4.25
 Structure conservation index:   0.72
 SVM decision value:   5.41
 SVM RNA-class probability: 0.999986
 Prediction: RNA

######################################################################

>hg17.chr14/97086718-97086838
AAGAAAGCCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGACUCUAGGCUGGAGCUGGGGUCAUUAAAUUCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCU
.....(((((...(((...((.(((((((((((....(((((((((....(((((((((((.(....))))))))))))..))))).)))))))))))))))..))....)))..))))) ( -55.60)
>canFam1.chr8/69072277-69072397
AAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGGCUCUAGGCUGGAGCCAGGGUCAUUAAAUUCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCU
.....((((.....)))).((.(((((((((((....(((((((((....(((((((((.(((....))))))))))))..))))).)))))))))))))))((((......)))))).. ( -54.80)
>mm5.chr??/413-509
GAUUAAUAAUUAGCUAGAAGGAGUUGAUGGUCCUUGGCUAAAACGUGGGUCAUUAACUCCAGCCAGUCAUUAAUUGCCUGGAAAUGUCCUGGGCU
(((((((.(((.(((....((((((((((..((.((.......)).))..))))))))))))).))).)))))))(((((((....))).)))). ( -36.00)
>rn3.chr6/130927455-130927575
AAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGGACCCAGGGAAUGGAGGAUGGCUCUAGGCUGAAGCUGGGGUCAUUAAAUCCUGCUGGUCAUUAAUCCUCUGGAAAUGCCCAGGGCU
.....((((.....)))).((.(((((((((((....((((.(...(((.(((((((((((.(....))))))))))))...)))).)))))))))))))))((((......)))))).. ( -46.20)
>consensus
AAGAAAGGCUGCUGGCCUACCUGGGAUUAAUGAGUACCCAGGGAAUGUGGGAUGGCUCUAGGCUGAAGCUGGGGUCAUUAAAUCCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCU
.....((((.....)))).....((((((((((....(((((((((....(((((((((((.......)))))))))))..))))).))))))))))))))(((((......)))))... (-34.45 = -35.20 +   0.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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