Structure #64344
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | - |
| Position | 97,086,718 - 97,086,838 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 75 |
| Columns | 120 |
| Mean single MFE | -37.78 |
| Consensus MFE | -23.44 |
| Combinations/base pair | 46 / 34 = 1.35 |
| SCI | 0.62 |
| z-score | -3.14 |
| RNA class probability | 0.999842 |
This structure is part of cluster 33379
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.00 Mean single sequence MFE: -37.78 Consensus MFE: -23.44 Energy contribution: -23.25 Covariance contribution: -0.19 Mean z-score: -3.14 Structure conservation index: 0.62 SVM decision value: 4.22 SVM RNA-class probability: 0.999842 Prediction: RNA ###################################################################### >hg17.chr14/97086838-97086718 AGCCCUGGGCAUUUCCAGGGGAUUAAUGACCAGCGGAAUUUAAUGACCCCAGCUCCAGCCUAGAGUCAUCCCACAUUCCCUGGGUACUCAUUAAUCCCAGGUAGGCCAGCAGGCUUUCUU .((((((((....)))))(((((((((((((((.(((((...((((((...((....))...).))))).....)))))))))....))))))))))).)))(((((....))))).... ( -44.20) >canFam1.chr8/69072397-69072277 AGCCCUGGGCAUUUCCAGGGGAUUAAUGACCAGCGGAAUUUAAUGACCCUGGCUCCAGCCUAGAGCCAUCCCACAUUCCCUGGGUACUCAUUAAUCCCAGGUAGGCCAGCAGCCUUUCUU .((((((((....)))))(((((((((((((((.(((((.....((...((((((.......))))))))....)))))))))....))))))))))).)))((((.....))))..... ( -46.00) >mm5.chr??/413-509 AGCCCAGGACAUUUCCAGGCAAUUAAUGACUGGCUGGAGUUAAUGACCCACGUUUUAGCCAAGGACCAUCAACUCCUUCUAGCUAAUUAUUAAUC .(((..(((....))).))).((((((((.(((((((((((.(((..((..((....))...))..))).))))))....))))).)))))))). ( -27.10) >rn3.chr6/130927575-130927455 AGCCCUGGGCAUUUCCAGAGGAUUAAUGACCAGCAGGAUUUAAUGACCCCAGCUUCAGCCUAGAGCCAUCCUCCAUUCCCUGGGUCCUCAUUAAUCCCAGGUAGGCCAGCAGCCUUUCUU .((((((((....))))).((((((((((((....)).......(((((..((....))...(((.....)))........))))).))))))))))..)))((((.....))))..... ( -33.80) >consensus AGCCCUGGGCAUUUCCAGGGGAUUAAUGACCAGCGGAAUUUAAUGACCCCAGCUCCAGCCUAGAGCCAUCCCACAUUCCCUGGGUACUCAUUAAUCCCAGGUAGGCCAGCAGCCUUUCUU .((((((((....)))))(((((((((((((((.(((((.....((.....((((.......))))..))....)))))))))....))))))))))).....))).............. (-23.44 = -23.25 + -0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
