Structure #64346

Summary

Genome/Assembly hg17
Chromosome/Contig chr14
Strand +
Position 97,086,758 - 97,086,878
Number of sequences 4
Organisms human, dog, mouse, rat
Mean pairwise identity 73.89
Columns 120
Mean single MFE -41.02
Consensus MFE -24.21
Combinations/base pair 43 / 33 = 1.30
SCI 0.59
z-score -3.33
RNA class probability 0.999913

This structure is part of cluster 33379

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  73.89
 Mean single sequence MFE: -41.03
 Consensus MFE: -24.21
 Energy contribution: -27.15
 Covariance contribution:   2.94
 Mean z-score:  -3.33
 Structure conservation index:   0.59
 SVM decision value:   4.52
 SVM RNA-class probability: 0.999913
 Prediction: RNA

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>hg17.chr14/97086758-97086878
GGGAAUGUGGGAUGACUCUAGGCUGGAGCUGGGGUCAUUAAAUUCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCUGAGGUCAUUAUUCUUGGGAGAUAAAAAAUUCAGGACCAAA
.(((((....(((((((((((.(....))))))))))))..)))))..(((((.......((((((......))))))(((((....((((((....)).))))....)))))))))).. ( -44.30)
>canFam1.chr8/69072317-69072437
GGGAAUGUGGGAUGGCUCUAGGCUGGAGCCAGGGUCAUUAAAUUCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCUGAGGUCAUUAUUCUGGGGAGAUAAAAAAUUCAAGACCAAA
.(((((....(((((((((.(((....))))))))))))..)))))..(((((.....(((((.(((((((((((....)).)).)))).))).)))))((........))..))))).. ( -46.60)
>mm5.chr??/430-521
GAAGGAGUUGAUGGUCCUUGGCUAAAACGUGGGUCAUUAACUCCAGCCAGUCAUUAAUUGCCUGGAAAUGUCCUGGGCUGAGGUCAUUAUU
...((((((((((..((.((.......)).))..))))))))))..((((.((.....)).)))).((((.(((......))).))))... ( -34.50)
>rn3.chr6/130927495-130927615
GGGAAUGGAGGAUGGCUCUAGGCUGAAGCUGGGGUCAUUAAAUCCUGCUGGUCAUUAAUCCUCUGGAAAUGCCCAGGGCUGGGGCUAUUAUUCUUGGGAGAUAAAAAAUUCAGGACCAAA
.((...(((.(((((((((((.(....))))))))))))...)))..))((((.....((((..((((((((((.......)))).))).)))..))))((........))..))))... ( -38.70)
>consensus
GGGAAUGUGGGAUGGCUCUAGGCUGAAGCUGGGGUCAUUAAAUCCCGCUGGUCAUUAAUCCCCUGGAAAUGCCCAGGGCUGAGGUCAUUAUUCUUGGGAGAUAAAAAAUUCAGGACCAAA
.(((((....(((((((((((.......)))))))))))..)))))..(((((.......((((((......))))))((((((.......))))))................))))).. (-24.21 = -27.15 +   2.94) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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