Structure #65908
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr15 |
| Strand | + |
| Position | 34,050,614 - 34,050,733 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 92.94 |
| Columns | 119 |
| Mean single MFE | -36.14 |
| Consensus MFE | -32.2 |
| Combinations/base pair | 38 / 33 = 1.15 |
| SCI | 0.89 |
| z-score | -2.88 |
| RNA class probability | 0.999861 |
This structure is part of cluster 34253
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 119 Columns: 119 Strand: + Mean pairwise identity: 92.94 Mean single sequence MFE: -36.14 Consensus MFE: -32.20 Energy contribution: -32.52 Covariance contribution: 0.32 Mean z-score: -2.88 Structure conservation index: 0.89 SVM decision value: 4.29 SVM RNA-class probability: 0.999861 Prediction: RNA ###################################################################### >hg17.chr15/34050614-34050733 AUACAAAGCUGGGCCUCAGCUCAUUCCCUCUUUGCUUAAAUUCCCUGCAAAUGUGCAAGAGAAGCAGCAGUGGGUGUCAUCAAUCACAGGCCACUGUGACAUAUGCUGAAACCUGACCA .......(..(((..(((((.....(((.((((((((...(((..((((....)))).))))))))).)).))).........((((((....)))))).....)))))..)))..).. ( -33.90) >canFam1.chr30/6452530-6452649 AUACAAAGCUGGGCCUCAGCUCAUUCCCUCUUUGCUUAAAUUCCCUGCAAAUGUGCAAGAGAAGCAGCAGAGGGUGUCAUCAAUCACAGGCCACUGUGACAUAUGCUGAAACCUGACCA .......(..(((..(((((.....((((((((((((...(((..((((....)))).))))))))).)))))).........((((((....)))))).....)))))..)))..).. ( -38.10) >mm5.chr2/114849211-114849330 AUACCAAGCCGGGCCUCAGCUCAUUCCCUCUUUGCUUAAAUUCCCUGCAAAUGUGCAAGAGAAGCAGCAGAGGGUAUCAUCAAUCACAGACCACUGUGACAUAUGCUGAAACCUGACCA .........((((..(((((.....((((((((((((...(((..((((....)))).))))))))).)))))).........((((((....)))))).....)))))..)))).... ( -38.90) >rn3.chr3/100939456-100939575 AUACCAAGCCAGGCCUCAGCUCAUUCCCUCUUUGCUUAAAUUCCCUGCAAAUGUGCAAGAGAAGCAGCAGAGGGUGUCAUCAAUCACAGACCACUGUGACAUAUGCUGAAACCUGACCA .........((((..(((((.....((((((((((((...(((..((((....)))).))))))))).)))))).........((((((....)))))).....)))))..)))).... ( -39.60) >galGal2.chr5/27640764-27640645 AUAUGAAUCUGAGGCUCUGUUCAUUCCCUCUUUGCUUAAAUUCCCCACAAAUGUGCAAGGGAAGCAGCAGAGGGUGUCAUCAAUCAUGGGCUACUCUGACAUAUGCUGAAACCUGACCA (((((..((.(((((((((......(((((((((((.....(((((((....)))...))))))))).))))))..........)).))))..))).)))))))............... ( -30.19) >consensus AUACAAAGCUGGGCCUCAGCUCAUUCCCUCUUUGCUUAAAUUCCCUGCAAAUGUGCAAGAGAAGCAGCAGAGGGUGUCAUCAAUCACAGGCCACUGUGACAUAUGCUGAAACCUGACCA .........((((..(((((.....((((((((((((....((..((((....)))).)).)))))).)))))).........((((((....)))))).....)))))..)))).... (-32.20 = -32.52 + 0.32)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
