Structure #66409

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	+
Position	35,993,553 - 35,993,666
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	66.49
Columns	120
Mean single MFE	-36.1
Consensus MFE	-11.38
Combinations/base pair	38 / 26 = 1.46
SCI	0.32
z-score	-2.88
RNA class probability	0.993841

This structure is part of cluster 34519

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  66.49
 Mean single sequence MFE: -36.10
 Consensus MFE: -11.38
 Energy contribution: -12.38
 Covariance contribution:   1.00
 Mean z-score:  -2.88
 Structure conservation index:   0.32
 SVM decision value:   2.43
 SVM RNA-class probability: 0.993841
 Prediction: RNA

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>hg17.chr15/35993553-35993666
UUGAAGGGCGAAGUGACAGCGGAUUCAGGGAGAUUCGCUGGCUAAUGGACAGGGGAAUAAAUUCUCCCCAGAACAUUCCCCAUUCCAACCACUGGAAAUGGAGUCGCCCUUCA
.((((((((((.....(((((((((......)))))))))...((((..(.(((((........))))).)..))))..((((((((.....))).)))))..)))))))))) ( -47.50)
>canFam1.chr30/8218237-8218349
UUGAAGGGCAAUGUGACAGAGGAUUCAGAGAGAUUGGUUGGCUAAUGAAUGGGGGAAUAAAUUCUCCCAGAACUCUCCCUGUUCAAACCAUUGGAAAUGGAGGCGCCCUUCA
.((((((((..((.(((((.(((....(((..(((((....)))))...((((((((....))))))))...)))))))))))))..((((.....))))....)))))))) ( -41.30)
>mm5.chr2/116640585-116640695
UUGAAGGGCAAAGUGACAGAGGAUUCAGAGAUAGGUUAGCUAAUGGAUGGGGGAAUAAAUUCUCCCAGAACACUCCUUGCUCAGACCACUGGAAAUGGAGUCACCCUUCA
.(((((((.....((((...(..(((((.....(((((((....(((((((((((....))))))))......)))..)))..)))).)))))..)...))))))))))) ( -33.40)
>rn3.chr3/102788748-102788860
UUGAAGGGCAAAGGGACAGAAGAUUCAGGGAGAUGGGUUAGCUAAUGGAUGGGGGAAUAAAUUCUCCCAGAACACUCCCUGUUCAGACCACUGGAAAUGGAGUCACCCUUCA
.(((((((......(((....((..(((((((.(((.....))).((..((((((((....))))))))...))))))))).))...(((.(....)))).))).))))))) ( -39.70)
>galGal2.chr??/0-98
GAUCUGAGAAAUUUGGCUGUGUGUCAGGCAGAGCAGUCAUUCUUUCUAGAAAUGUCCUCCAUAAACAGCAAAAAAGGAAAUUGCAUCAUGCAUUAAAA
..(((.(((((..(((((((.((.....))..)))))))...))))))))....((((................))))...(((.....)))...... ( -18.59)
>consensus
UUGAAGGGCAAAGUGACAGAGGAUUCAGGGAGAUUGGUUGGCUAAUGGAUGGGGGAAUAAAUUCU_CCCAGAACACUCCCUGUUCAA____ACCACUGGAAAUGGAGUCACCCUUC___A
..((((((.................(((((((.....(((.....)))..(((((((....)))).)))......)))))))..........(((.......))).....)))))).... (-11.38 = -12.38 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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