Structure #66413

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	-
Position	35,993,553 - 35,993,666
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	66.49
Columns	120
Mean single MFE	-31.72
Consensus MFE	-15.87
Combinations/base pair	38 / 24 = 1.58
SCI	0.5
z-score	-2.33
RNA class probability	0.992439

This structure is part of cluster 34519

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  66.49
 Mean single sequence MFE: -31.72
 Consensus MFE: -15.87
 Energy contribution: -16.55
 Covariance contribution:   0.68
 Mean z-score:  -2.33
 Structure conservation index:   0.50
 SVM decision value:   2.33
 SVM RNA-class probability: 0.992439
 Prediction: RNA

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>hg17.chr15/35993666-35993553
UGAAGGGCGACUCCAUUUCCAGUGGUUGGAAUGGGGAAUGUUCUGGGGAGAAUUUAUUCCCCUGUCCAUUAGCCAGCGAAUCUCCCUGAAUCCGCUGUCACUUCGCCCUUCAA
(((((((((((((((((.((((...)))))))))))((((..(.((((((......)))))).)..)))).(.(((((..((.....))...))))).)...)))))))))). ( -48.40)
>canFam1.chr30/8218349-8218237
UGAAGGGCGCCUCCAUUUCCAAUGGUUUGAACAGGGAGAGUUCUGGGAGAAUUUAUUCCCCCAUUCAUUAGCCAACCAAUCUCUCUGAAUCCUCUGUCACAUUGCCCUUCAA
((((((((....((((.....))))......((((((((....((((.(((....))).))))................))))))))................)))))))). ( -32.95)
>mm5.chr2/116640695-116640585
UGAAGGGUGACUCCAUUUCCAGUGGUCUGAGCAAGGAGUGUUCUGGGAGAAUUUAUUCCCCCAUCCAUUAGCUAACCUAUCUCUGAAUCCUCUGUCACUUUGCCCUUCAA
(((((((..(.........(((.((((.(((..((((((....((((.(((....))).)))).......)))..)))..))).))..)).))).....)..))))))). ( -29.94)
>rn3.chr3/102788860-102788748
UGAAGGGUGACUCCAUUUCCAGUGGUCUGAACAGGGAGUGUUCUGGGAGAAUUUAUUCCCCCAUCCAUUAGCUAACCCAUCUCCCUGAAUCUUCUGUCCCUUUGCCCUUCAA
(((((((..(..((((.....))))......(((((((((...((((.(((....))).))))..............)).)))))))..............)..))))))). ( -33.43)
>galGal2.chr??/0-98
UUUUAAUGCAUGAUGCAAUUUCCUUUUUUGCUGUUUAUGGAGGACAUUUCUAGAAAGAAUGACUGCUCUGCCUGACACACAGCCAAAUUUCUCAGAUC
........(((((.((((.........))))...)))))((((((((((.......)))))...(((.((.......)).))).....)))))..... ( -13.90)
>consensus
U___GAAGGGUGACUCCAUUUCCAGUGGU____UUGAACAGGGAGUGUUCUGGG_AGAAUUUAUUCCCCCAUCCAUUAGCCAACCAAUCUCCCUGAAUCCUCUGUCACUUUGCCCUUCAA
....(((((((((..((((.....))))..........(((((((.....((((.............)))).................)))))))..............))))))))).. (-15.87 = -16.55 +   0.68)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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