Structure #66415
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr15 |
| Strand | + |
| Position | 35,993,593 - 35,993,705 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 73.91 |
| Columns | 120 |
| Mean single MFE | -27.35 |
| Consensus MFE | -9.89 |
| Combinations/base pair | 25 / 20 = 1.25 |
| SCI | 0.36 |
| z-score | -2.29 |
| RNA class probability | 0.982384 |
This structure is part of cluster 34519
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 73.91 Mean single sequence MFE: -27.35 Consensus MFE: -9.89 Energy contribution: -10.73 Covariance contribution: 0.84 Mean z-score: -2.29 Structure conservation index: 0.36 SVM decision value: 1.91 SVM RNA-class probability: 0.982384 Prediction: RNA ###################################################################### >hg17.chr15/35993593-35993705 GCUAAUGGACAGGGGAAUAAAUUCUCCCCAGAACAUUCCCCAUUCCAACCACUGGAAAUGGAGUCGCCCUUCAGAUAAUCUGUAUGCCUGUUUCUUUUUUCCAUUUUCAAUU .....((((..(((((((...((((....)))).)))))))..)))).....(((((((((((........(((.............)))........)))))))))))... ( -29.41) >canFam1.chr30/8218277-8218388 GCUAAUGAAUGGGGGAAUAAAUUCUCCCAGAACUCUCCCUGUUCAAACCAUUGGAAAUGGAGGCGCCCUUCAGAUCAUCUGUAUGCCUGUUUCUUUUUUCCAUUUUCAAUU .........((((((((....))))))))((((.......)))).....((((((((((((((((.....(((.....)))..))))...........)))))))))))). ( -31.50) >mm5.chr2/116640623-116640734 GCUAAUGGAUGGGGGAAUAAAUUCUCCCAGAACACUCCUUGCUCAGACCACUGGAAAUGGAGUCACCCUUCAAAUAAUCUGUAUGCCUGGUUUUUUUUUCCAUUUUCAAUU (..((((((((((((((....)))))))).......((..((.((((((...))...(((((.....))))).....))))...))..))........))))))..).... ( -27.10) >rn3.chr3/102788788-102788900 GCUAAUGGAUGGGGGAAUAAAUUCUCCCAGAACACUCCCUGUUCAGACCACUGGAAAUGGAGUCACCCUUCAAACAAUCUGUAUGCCUGUUUCUUUUUUUCCAUUUUCAAUU .....(((.((((((((....))))))))(((((.....)))))...))).(((((((((((.........(((((..(.....)..)))))......)))))))))))... ( -29.86) >galGal2.chr??/19-137 UGUGUCAGGCAGAGCAGUCAUUCUUUCUAGAAAUGUCCUCCAUAAACAGCAAAAAAGGAAAUUGCAUCAUGCAUUAAAAAAAAAUCUGUCUGAAUGUUUCUUAAUUGUAUGUAGAACU ....(((((((((((.....((((....))))(((.....))).....))............(((.....)))...........)))))))))..((((..((......))..)))). ( -18.90) >consensus GCUAAUGGAUGGGGGAAUAAAUUCU_CCCAGAACACUCCCUGUUCAA____ACCACUGGAAAUGGAGUCACCCUUC___AAAUAAUCUGUAUGCCUGUUUC_UUUUUUCCAUUUUCAAUU ...........(((((.....((((....))))...)))))...............(((((((((((.......................................)))))))))))... ( -9.89 = -10.73 + 0.84)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
