Structure #66425
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr15 |
| Strand | + |
| Position | 35,993,705 - 35,993,824 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 74.87 |
| Columns | 120 |
| Mean single MFE | -31.85 |
| Consensus MFE | -18.52 |
| Combinations/base pair | 36 / 28 = 1.29 |
| SCI | 0.58 |
| z-score | -3.05 |
| RNA class probability | 0.999604 |
This structure is part of cluster 34519
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 74.87 Mean single sequence MFE: -31.85 Consensus MFE: -18.52 Energy contribution: -19.80 Covariance contribution: 1.28 Mean z-score: -3.05 Structure conservation index: 0.58 SVM decision value: 3.77 SVM RNA-class probability: 0.999604 Prediction: RNA ###################################################################### >hg17.chr15/35993705-35993824 UAUAAUAACAAUAACGACCUAGACAUAGGACAUUUCCUGGGCUUUAAUGACUGUCUGAGGUUAAUGGCCCUCAACUACACCUCAGGCCAUCAACCCCUCCCAGCUGGUCAUUAAUCUCC .................((((....)))).........(((..((((((((((.(((.((((.((((((...............)))))).)))).....))).))))))))))..))) ( -30.96) >mm5.chr2/116640734-116640853 UAUAAUAACAAUAACGACCUAGACAUAGGACAUUUCCUGGGCCUUAAUGACUGUCUGAGGUUAAUGGCCCUCAACCACACCUCAGGCCAACAACCCCUCCUAGUUGGUCAUUAAUCUCC .................((((....)))).........(((..((((((((.(((((((((...(((.......))).)))))))))...((((........))))))))))))..))) ( -31.80) >rn3.chr3/102788900-102789019 UAUAAUAACAAUAACGACCUAGACAUAGGACAUUUCCUGGGCCUUAAUGACUGUCUGAGGUUAAUGGCCCUCAACUACACCUCAGGCCAUCAACCCCUCCCAGUUGGUCAUUAAUCUCC ...............((((..(((..((((....))))(((......(((..(((((((((...(((.......))).)))))))))..)))......))).))))))).......... ( -30.20) >galGal2.chr??/137-256 CAUUAUGACAGUAUUGGGCCAAACACAGGGCAUUUCCUUGAGAUUAAUAACUGGCCAGGGUUAAUGGCCCUCAGCAGUGCCUCGGGCCAUCAACUCCUCCCAGCCAGUCAUUACUCCCU ...............(((.......(((((.....)))))....((((.((((((.((((((.(((((((...((...))...))))))).))).)))....)))))).))))..))). ( -37.70) >danRer1.chrNA/107870604-107870486 UUCAAUACCAACAAUAACGUCACAAAUGGGCAUUUCAGGAGAUUAAUGGUAGACCGAAGCUAAUAGCCUUUGGCUGACUCUCCAGCCAUCAGCUUUUCCCAGCUGCUCAUUAAUUCCC ..................(((.(....))))......((..(((((((((((...((((.....(((...((((((......))))))...)))))))....)))).)))))))..)) ( -28.60) >consensus UAUAAUAACAAUAACGAC_CUAGACAUAGGACAUUUCCUGGGCAUUAAUGACUGUCUGAGGUUAAUGGCCCUCAACUACACCUCAGGCCAUCAACCCCUCCCAGCUGGUCAUUAAUCUCC ..........................(((((....)))))....((((((((((.(((.((((.((((((...............)))))).)))).....))).))))))))))..... (-18.52 = -19.80 + 1.28)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
