Structure #66433
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr15 |
| Strand | - |
| Position | 35,993,744 - 35,993,857 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 79.17 |
| Columns | 113 |
| Mean single MFE | -40.18 |
| Consensus MFE | -31.93 |
| Combinations/base pair | 43 / 29 = 1.48 |
| SCI | 0.79 |
| z-score | -3.36 |
| RNA class probability | 0.972751 |
This structure is part of cluster 34519
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 113 Columns: 113 Strand: + Mean pairwise identity: 79.17 Mean single sequence MFE: -40.18 Consensus MFE: -31.93 Energy contribution: -31.06 Covariance contribution: -0.88 Mean z-score: -3.36 Structure conservation index: 0.79 SVM decision value: 1.70 SVM RNA-class probability: 0.972751 Prediction: RNA ###################################################################### >hg17.chr15/35993857-35993744 AAACAAUAAUGACCCUGAAACAGGAUAUUUCCUGGAGAUUAAUGACCAGCUGGGAGGGGUUGAUGGCCUGAGGUGUAGUUGAGGGCCAUUAACCUCAGACAGUCAUUAAAGCC ......(((((((.......(((((....)))))........((.((....))..((((((((((((((..((.....))..))))))))))))))...)))))))))..... ( -39.30) >canFam1.chr30/8218540-8218427 AAACAAUAAUGACCCUGGAACAGGAUAUUUCCUGGAGAUUAAUGACCAGCUGGGAGGGGUUGAUGGCCUGAGGUGUAGUUGAGGGCCAUUAACCUCAGACAGUCAUUAAAGCC ......(((((((((..(..(((((....)))))...............)..)).((((((((((((((..((.....))..)))))))))))))).....)))))))..... ( -41.53) >mm5.chr2/116640886-116640773 AAACAAUAAUGACCCUGGAACAGGGUACUUCCUGGAGAUUAAUGACCAACUAGGAGGGGUUGUUGGCCUGAGGUGUGGUUGAGGGCCAUUAACCUCAGACAGUCAUUAAGGCC .((((((....((((((...)))))).((((((((..............)))))))).))))))(((((..((((..(((((((........))))).))...)))).))))) ( -40.64) >rn3.chr3/102789052-102788939 AAACAAUAAUGACCCUGGAACAUGGUACUUCCUGGAGAUUAAUGACCAACUGGGAGGGGUUGAUGGCCUGAGGUGUAGUUGAGGGCCAUUAACCUCAGACAGUCAUUAAGGCC ......(((((((((..(....((((.(((....))).......)))).)..)).((((((((((((((..((.....))..)))))))))))))).....)))))))..... ( -38.20) >galGal2.chr??/176-288 AAACAAUAACUACCCAGCAAAGGGCAUUUCCUAGGGAGUAAUGACUGGCUGGGAGGAGUUGAUGGCCCGAGGCACUGCUGAGGGCCAUUAACCCUGGCCAGUUAUUAAUCUC ............(((......))).........((((.(((((((((((..((....(((((((((((..(((...)))..)))))))))))))..))))))))))).)))) ( -52.40) >danRer1.chrNA/107870524-107870637 AAACAAUAAUGAUGGCAAUGUAUGACAUUUUCUGGGAAUUAAUGAGCAGCUGGGAAAAGCUGAUGGCUGGAGAGUCAGCCAAAGGCUAUUAGCUUCGGUCUACCAUUAAUCUC .............((.((((.....)))).)).((((.((((((..(((((......)))))..((((((((....((((...)))).....))))))))...)))))))))) ( -29.00) >consensus AAACAAUAAUGACCCUGGAACAGGAUAUUUCCUGGAGAUUAAUGACCAGCUGGGAGGGGUUGAUGGCCUGAGGUGUAGUUGAGGGCCAUUAACCUCAGACAGUCAUUAAAGCC ......(((((((................((((((..............))))))((((((((((((((..((.....))..)))))))))))))).....)))))))..... (-31.93 = -31.06 + -0.88)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
