Structure #69534

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	-
Position	70,393,046 - 70,393,122
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.61
Columns	77
Mean single MFE	-20.68
Consensus MFE	-15.05
Combinations/base pair	19 / 13 = 1.46
SCI	0.73
z-score	-3.19
RNA class probability	0.999405

This structure is part of cluster 36252

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 77
 Columns: 77
 Strand: +
 Mean pairwise identity:  79.61
 Mean single sequence MFE: -20.68
 Consensus MFE: -15.05
 Energy contribution: -14.92
 Covariance contribution:  -0.13
 Mean z-score:  -3.19
 Structure conservation index:   0.73
 SVM decision value:   3.58
 SVM RNA-class probability: 0.999405
 Prediction: RNA

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>hg17.chr15/70393122-70393046
GAGACAAGCUGUAACAUUCCAUGUGGGAAACAGCAUGGUAAAGGUGCAGACACAGAAGGAACAGGUGGGUGUGAAA
.(.((.(.((((..(...((((((.(....).)))))).....(((....)))....)..)))).)..)).).... ( -18.60)
>canFam1.chr30/38758194-38758117
GAGACAAACUGUAACAUUCCAUGUGGGAAACCGCAUGGUAAAGGUGCAGAGACAGAAGGAACAAGAUGGGUGUGAAA
........(((((.....((((((((....))))))))......)))))............................ ( -22.90)
>mm5.chr9/0-73
GAGACAAGCUGGAACACCCAUGCAGGAAACUGUGCGAUAAAAUUCAGAGCUGGAAGGAACAGGUGGGUGUGAA
.............((((((((((((....))))................(((.......)))))))))))... ( -22.20)
>rn3.chr8/0-72
GAGACAAGCUGGAACACCCGUGCAGGAAACGGGGUGGUAAAAUUCAGAGCUGGAAGGAACAGCGGGUAUGAA
...((..((((...(((((.....(....).)))))......((((....)))).....))))..))..... ( -19.00)
>consensus
GAGACAAGCUGGAACAC_CCAUGCAGGAAACAGCAUGGUAAAA_UGCAGAGACAGAAGGAACAGG_UGGGUGUGAA_
........(((((.....((((((((....))))))))......)))))............................ (-15.05 = -14.92 +  -0.13) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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