Structure #72115

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	+
Position	95,140,443 - 95,140,558
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.97
Columns	120
Mean single MFE	-35.96
Consensus MFE	-26.49
Combinations/base pair	41 / 34 = 1.21
SCI	0.74
z-score	-2.86
RNA class probability	0.988432

This structure is part of cluster 37613

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.97
 Mean single sequence MFE: -35.96
 Consensus MFE: -26.49
 Energy contribution: -26.30
 Covariance contribution:  -0.19
 Mean z-score:  -2.86
 Structure conservation index:   0.74
 SVM decision value:   2.12
 SVM RNA-class probability: 0.988432
 Prediction: RNA

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>hg17.chr15/95140443-95140558
CUAGAGGCUCAAAAAGCUAUUUCAUAAAGAAAUGUUGUUCCAGCUCUAUAAUUUCAAGCAUCCCAAUCACCACUGGCCCCUUGUAGGCCUCAGGCCUACAAGGAUGUCUGGGCGA
.(((((.((.....(((.(((((.....)))))))).....)))))))..................((.((...(((.(((((((((((...)))))))))))..)))..)).)) ( -35.10)
>mm5.chr7/76120282-76120167
CUUGAGGCUUAGAAAGCCCUAUCCUAAGGAAAUUUUGUCCUGGCCCUAUAAUUUUAAGCAUCCCAAUCAGCACUGACCCCUUGUAGGCCUCAGGCCUACAAGGUUGUCUGCCAGU
.....((((.....))))...(((...))).........(((((.............((..........))...(((.(((((((((((...)))))))))))..))).))))). ( -35.30)
>rn3.chr1/143212702-143212583
CUGGAGGCUUAGAAAGCCCUACCCUAAGGAAAUGUUAUCCUAGCCCUAUAAUUUUAAGCAUCCCAGUCAAUCAGCACUGGCCCCUUGUAGGCCUCAGGCCUACAAGGCUGUCUGCCAGU
((((..((((((((.........(((.(((.......))))))........))))))))...)))).........((((((.(((((((((((...)))))))))))......)))))) ( -41.43)
>canFam1.chr3/48434290-48434174
CUAGAGGCUCAAAAAGCUAUUUCAUAAAGAAAUGUUGUUCAAGCUCUAUAAUUUCAAGCAUCCCAAUCACCACUGGCCUCUUGUAGGCCUCAGGCCCUACAAGGGUGUCUGGGCAG
.(((((.((..((.(((.(((((.....)))))))).))..))))))).............((((..((((........((((((((((...)).))))))))))))..))))... ( -32.00)
>consensus
CUAGAGGCUCAAAAAGCCAUAUCAUAAAGAAAUGUUGUCCUAGCCCUAUAAUUUCAAGCAUCC____CAAUCACCACUGGCCCCUUGUAGGCCUCAGG_CCUACAAGGAUGUCUGCCAGU
.(((.((((..((.(((.(((((.....)))))))).))..))))))).........................(((..(((.(((((((((((...)).)))))))))..)))))).... (-26.49 = -26.30 +  -0.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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