Structure #72116

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	-
Position	95,140,443 - 95,140,558
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.97
Columns	120
Mean single MFE	-39.38
Consensus MFE	-27.29
Combinations/base pair	43 / 34 = 1.26
SCI	0.69
z-score	-2.29
RNA class probability	0.918584

This structure is part of cluster 37613

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.97
 Mean single sequence MFE: -39.38
 Consensus MFE: -27.29
 Energy contribution: -27.23
 Covariance contribution:  -0.06
 Mean z-score:  -2.29
 Structure conservation index:   0.69
 SVM decision value:   1.12
 SVM RNA-class probability: 0.918584
 Prediction: RNA

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>hg17.chr15/95140558-95140443
UCGCCCAGACAUCCUUGUAGGCCUGAGGCCUACAAGGGGCCAGUGGUGAUUGGGAUGCUUGAAAUUAUAGAGCUGGAACAACAUUUCUUUAUGAAAUAGCUUUUUGAGCCUCUAG
(((((......((((((((((((...))))))))))))......)))))...(((.(((..((......((((((......)(((((.....))))))))))))..))).))).. ( -40.70)
>mm5.chr7/76120167-76120282
ACUGGCAGACAACCUUGUAGGCCUGAGGCCUACAAGGGGUCAGUGCUGAUUGGGAUGCUUAAAAUUAUAGGGCCAGGACAAAAUUUCCUUAGGAUAGGGCUUUCUAAGCCUCAAG
.(((((.(((..(((((((((((...))))))))))).)))................((((......))))))))).........(((...)))..(((((.....))))).... ( -39.10)
>rn3.chr1/143212583-143212702
ACUGGCAGACAGCCUUGUAGGCCUGAGGCCUACAAGGGGCCAGUGCUGAUUGACUGGGAUGCUUAAAAUUAUAGGGCUAGGAUAACAUUUCCUUAGGGUAGGGCUUUCUAAGCCUCCAG
((((((......(((((((((((...))))))))))).)))))).........((((....((((......)))).((((((.......))).)))....(((((.....))))))))) ( -42.40)
>canFam1.chr3/48434174-48434290
CUGCCCAGACACCCUUGUAGGGCCUGAGGCCUACAAGAGGCCAGUGGUGAUUGGGAUGCUUGAAAUUAUAGAGCUUGAACAACAUUUCUUUAUGAAAUAGCUUUUUGAGCCUCUAG
...(((((.((((((((((((.(....).))))))))........)))).))))).............(((((((..((....(((((.....))))).....))..)).))))). ( -35.30)
>consensus
ACGCCCAGACAACCUUGUAGG_CCUGAGGCCUACAAGGGGCCAGUGCUGAUUG____GGAUGCUUAAAAUUAUAGAGCUAGAACAACAUUUCCUUAGGAAAGAGCUUUCUAAGCCUCUAG
....(((....((((((((((.((...)))))))))))).....)))..........(((.((((((......((((((.........((((.....)))).)))))))))))).))).. (-27.29 = -27.23 +  -0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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