Structure #72118
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr15 |
| Strand | + |
| Position | 95,140,483 - 95,140,598 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 83.83 |
| Columns | 120 |
| Mean single MFE | -32.23 |
| Consensus MFE | -22.23 |
| Combinations/base pair | 35 / 30 = 1.17 |
| SCI | 0.69 |
| z-score | -2.53 |
| RNA class probability | 0.957392 |
This structure is part of cluster 37613
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.83 Mean single sequence MFE: -32.24 Consensus MFE: -22.23 Energy contribution: -22.10 Covariance contribution: -0.13 Mean z-score: -2.53 Structure conservation index: 0.69 SVM decision value: 1.46 SVM RNA-class probability: 0.957392 Prediction: RNA ###################################################################### >hg17.chr15/95140483-95140598 CAGCUCUAUAAUUUCAAGCAUCCCAAUCACCACUGGCCCCUUGUAGGCCUCAGGCCUACAAGGAUGUCUGGGCGACCUAAGGAGAACAUUAAUAUAUGCAGCGUUUCCUUUUUAU ..(((.(((((((.......(((...((.((...(((.(((((((((((...)))))))))))..)))..)).)).....))).......))).)))).)))............. ( -33.14) >mm5.chr7/76120322-76120207 UGGCCCUAUAAUUUUAAGCAUCCCAAUCAGCACUGACCCCUUGUAGGCCUCAGGCCUACAAGGUUGUCUGCCAGUUCUAUGGAGGACAUUAAUGUAUGCGUCAUUUUCUUUUUAU (((((.((((................(((....)))..(((((((((((...))))))))))).(((((.(((......))).)))))....)))).).))))............ ( -32.60) >rn3.chr1/143212740-143212623 UAGCCCUAUAAUUUUAAGCAUCCCAGUCAAUCAGCACUGGCCCCUUGUAGGCCUCAGGCCUACAAGGCUGUCUGCCAGUCCUACAGAGACCUUUAAUGUAUGCAUCAUUUUCUUUAU .................((((..(((((....((.((((((.(((((((((((...)))))))))))......)))))).)).....)))......)).)))).............. ( -31.40) >canFam1.chr3/48434330-48434214 AAGCUCUAUAAUUUCAAGCAUCCCAAUCACCACUGGCCUCUUGUAGGCCUCAGGCCCUACAAGGGUGUCUGGGCAGCCUAAGGAGAACAUUAAUCUAUGCGGCAUUUGCUUUUUAU ...............(((((.((((..((((........((((((((((...)).))))))))))))..))))..(((((.(((.........))).)).)))...)))))..... ( -31.80) >consensus UAGCCCUAUAAUUUCAAGCAUCC____CAAUCACCACUGGCCCCUUGUAGGCCUCAGG_CCUACAAGGAUGUCUGCCAGUCCUAAGGAGAACAUUAAUGUAUGCAGCAUUUUCUUUUUAU ..(((.(((((((.......(((..........(((..(((.(((((((((((...)).)))))))))..)))))).........))).......))).)))).)))............. (-22.23 = -22.10 + -0.13)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
