Structure #72120

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	-
Position	95,140,483 - 95,140,598
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.83
Columns	120
Mean single MFE	-38.35
Consensus MFE	-20.11
Combinations/base pair	26 / 22 = 1.18
SCI	0.52
z-score	-2.96
RNA class probability	0.698552

This structure is part of cluster 37613

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.83
 Mean single sequence MFE: -38.35
 Consensus MFE: -20.11
 Energy contribution: -19.86
 Covariance contribution:  -0.25
 Mean z-score:  -2.96
 Structure conservation index:   0.52
 SVM decision value:   0.35
 SVM RNA-class probability: 0.698552
 Prediction: RNA

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>hg17.chr15/95140598-95140483
AUAAAAAGGAAACGCUGCAUAUAUUAAUGUUCUCCUUAGGUCGCCCAGACAUCCUUGUAGGCCUGAGGCCUACAAGGGGCCAGUGGUGAUUGGGAUGCUUGAAAUUAUAGAGCUG
.......(....)(((..(((..((((.((..((((..(((((((......((((((((((((...))))))))))))......))))))))))).))))))...)))..))).. ( -39.80)
>mm5.chr7/76120207-76120322
AUAAAAAGAAAAUGACGCAUACAUUAAUGUCCUCCAUAGAACUGGCAGACAACCUUGUAGGCCUGAGGCCUACAAGGGGUCAGUGCUGAUUGGGAUGCUUAAAAUUAUAGGGCCA
................((..........(((((...(((.((((((......(((((((((((...))))))))))).)))))).)))...))))).((((......)))))).. ( -36.40)
>rn3.chr1/143212623-143212740
AUAAAGAAAAUGAUGCAUACAUUAAAGGUCUCUGUAGGACUGGCAGACAGCCUUGUAGGCCUGAGGCCUACAAGGGGCCAGUGCUGAUUGACUGGGAUGCUUAAAAUUAUAGGGCUA
..............((...((((...((((....(((.((((((......(((((((((((...))))))))))).)))))).)))...))))..))))((((......)))))).. ( -43.00)
>canFam1.chr3/48434214-48434330
AUAAAAAGCAAAUGCCGCAUAGAUUAAUGUUCUCCUUAGGCUGCCCAGACACCCUUGUAGGGCCUGAGGCCUACAAGAGGCCAGUGGUGAUUGGGAUGCUUGAAAUUAUAGAGCUU
.....((((.......((((......)))).....((((((..(((((.((((((((((((.(....).))))))))........)))).)))))..)))))).........)))) ( -34.20)
>consensus
AUAAAAAGAAAAUGACGCAUACAUUAAUGUUCUCCUUAGGACGCCCAGACAACCUUGUAGG_CCUGAGGCCUACAAGGGGCCAGUGCUGAUUG____GGAUGCUUAAAAUUAUAGAGCUA
................................(((.........(((....((((((((((.((...)))))))))))).....)))..........))).((((.........)))).. (-20.11 = -19.86 +  -0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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