Structure #72122

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr15
Strand	+
Position	95,140,519 - 95,140,638
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.54
Columns	120
Mean single MFE	-41.4
Consensus MFE	-26.95
Combinations/base pair	21 / 19 = 1.11
SCI	0.65
z-score	-3.22
RNA class probability	0.986809

This structure is part of cluster 37613

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.54
 Mean single sequence MFE: -41.40
 Consensus MFE: -26.95
 Energy contribution: -26.57
 Covariance contribution:  -0.38
 Mean z-score:  -3.22
 Structure conservation index:   0.65
 SVM decision value:   2.06
 SVM RNA-class probability: 0.986809
 Prediction: RNA

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>hg17.chr15/95140519-95140638
CCCCUUGUAGGCCUCAGGCCUACAAGGAUGUCUGGGCGACCUAAGGAGAACAUUAAUAUAUGCAGCGUUUCCUUUUUAUUCCCUUUGGCGACCUGUGCCUUUGGGAUGUCUUUGAGGUG
..(((((((((((...)))))))))))((.((.(((((....(((((((.(((......))).....))))))).....((((...((((.....))))...)))))))))..)).)). ( -42.90)
>mm5.chr7/76120353-76120243
CCCCUUGUAGGCCUCAGGCCUACAAGGUUGUCUGCCAGUUCUAUGGAGGACAUUAAUGUAUGCGUCAUUUUCUUUUUAUUCCCUUUGGCGACUUGUGCCUUUGGGAUGUC
..(((((((((((...))))))))))).(((((.(((......))).)))))...........................((((...((((.....))))...)))).... ( -39.80)
>rn3.chr1/143212780-143212663
CCCCUUGUAGGCCUCAGGCCUACAAGGCUGUCUGCCAGUCCUACAGAGACCUUUAAUGUAUGCAUCAUUUUCUUUAUUCCCUUUGGCGACUUGUGCCUUUGGGAUGUCUUUGAGGUG
..(((((((((((...)))))))))))(((.....))).(((.(((((((.....(((....)))............((((...((((.....))))...)))).)))))))))).. ( -42.20)
>canFam1.chr3/48434370-48434250
CCUCUUGUAGGCCUCAGGCCCUACAAGGGUGUCUGGGCAGCCUAAGGAGAACAUUAAUCUAUGCGGCAUUUGCUUUUUAUUCCCUUUGGCAACCUAUGCCUUUGGGAUGUCUUUGAGAUG
.(((((.(((((((((((((((....))).)))))))..)))))))))).......((((....((((............((((...((((.....))))...))))))))....)))). ( -40.70)
>consensus
CCCCUUGUAGGCCUCAGG_CCUACAAGGAUGUCUGCCAGUCCUAAGGAGAACAUUAAUGUAUGCAGCAUUUUCUUUUUAUUCCCUUUGGCGACCUGUGCCUUUGGGAUGUCUUUGAGGUG
..(((((((((((...)).)))))))))....................................................((((...((((.....))))...))))............. (-26.95 = -26.57 +  -0.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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