Structure #72123
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr15 |
Strand | - |
Position | 95,140,519 - 95,140,638 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 83.54 |
Columns | 120 |
Mean single MFE | -37.98 |
Consensus MFE | -24.45 |
Combinations/base pair | 18 / 18 = 1.00 |
SCI | 0.64 |
z-score | -3.3 |
RNA class probability | 0.987041 |
This structure is part of cluster 37613
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.54 Mean single sequence MFE: -37.98 Consensus MFE: -24.45 Energy contribution: -24.70 Covariance contribution: 0.25 Mean z-score: -3.30 Structure conservation index: 0.64 SVM decision value: 2.06 SVM RNA-class probability: 0.987041 Prediction: RNA ###################################################################### >hg17.chr15/95140638-95140519 CACCUCAAAGACAUCCCAAAGGCACAGGUCGCCAAAGGGAAUAAAAAGGAAACGCUGCAUAUAUUAAUGUUCUCCUUAGGUCGCCCAGACAUCCUUGUAGGCCUGAGGCCUACAAGGGG .........(((.((((...(((.......)))...)))).....(((((......((((......))))..)))))..))).........((((((((((((...)))))))))))). ( -38.90) >mm5.chr7/76120243-76120353 GACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAAAGAAAAUGACGCAUACAUUAAUGUCCUCCAUAGAACUGGCAGACAACCUUGUAGGCCUGAGGCCUACAAGGGG ....((((...(((.......)))...))))...........................((((..(((......)))..)))).(((((((((((...))))))))))).. ( -36.50) >rn3.chr1/143212663-143212780 CACCUCAAAGACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAGAAAAUGAUGCAUACAUUAAAGGUCUCUGUAGGACUGGCAGACAGCCUUGUAGGCCUGAGGCCUACAAGGGG ..(((((.((((.((((...(((.......)))...))))..........(((((....)))))...)))).)).))).(((.....)))(((((((((((...))))))))))).. ( -43.00) >canFam1.chr3/48434250-48434370 CAUCUCAAAGACAUCCCAAAGGCAUAGGUUGCCAAAGGGAAUAAAAAGCAAAUGCCGCAUAGAUUAAUGUUCUCCUUAGGCUGCCCAGACACCCUUGUAGGGCCUGAGGCCUACAAGAGG ..(((........((((...((((.....))))...)))).......(((...(((....(((.......))).....))))))..)))..((((((((((.(....).)))))))).)) ( -33.50) >consensus CACCUCAAAGACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAAAGAAAAUGACGCAUACAUUAAUGUUCUCCUUAGGACGCCCAGACAACCUUGUAGG_CCUGAGGCCUACAAGGGG .............((((...(((.......)))...))))....................................................(((((((((.((...))))))))))).. (-24.45 = -24.70 + 0.25)