Structure #72123

Summary

Genome/Assembly hg17
Chromosome/Contig chr15
Strand -
Position 95,140,519 - 95,140,638
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 83.54
Columns 120
Mean single MFE -37.98
Consensus MFE -24.45
Combinations/base pair 18 / 18 = 1.00
SCI 0.64
z-score -3.3
RNA class probability 0.987041

This structure is part of cluster 37613

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.54
 Mean single sequence MFE: -37.98
 Consensus MFE: -24.45
 Energy contribution: -24.70
 Covariance contribution:   0.25
 Mean z-score:  -3.30
 Structure conservation index:   0.64
 SVM decision value:   2.06
 SVM RNA-class probability: 0.987041
 Prediction: RNA

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>hg17.chr15/95140638-95140519
CACCUCAAAGACAUCCCAAAGGCACAGGUCGCCAAAGGGAAUAAAAAGGAAACGCUGCAUAUAUUAAUGUUCUCCUUAGGUCGCCCAGACAUCCUUGUAGGCCUGAGGCCUACAAGGGG
.........(((.((((...(((.......)))...)))).....(((((......((((......))))..)))))..))).........((((((((((((...)))))))))))). ( -38.90)
>mm5.chr7/76120243-76120353
GACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAAAGAAAAUGACGCAUACAUUAAUGUCCUCCAUAGAACUGGCAGACAACCUUGUAGGCCUGAGGCCUACAAGGGG
....((((...(((.......)))...))))...........................((((..(((......)))..)))).(((((((((((...))))))))))).. ( -36.50)
>rn3.chr1/143212663-143212780
CACCUCAAAGACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAGAAAAUGAUGCAUACAUUAAAGGUCUCUGUAGGACUGGCAGACAGCCUUGUAGGCCUGAGGCCUACAAGGGG
..(((((.((((.((((...(((.......)))...))))..........(((((....)))))...)))).)).))).(((.....)))(((((((((((...))))))))))).. ( -43.00)
>canFam1.chr3/48434250-48434370
CAUCUCAAAGACAUCCCAAAGGCAUAGGUUGCCAAAGGGAAUAAAAAGCAAAUGCCGCAUAGAUUAAUGUUCUCCUUAGGCUGCCCAGACACCCUUGUAGGGCCUGAGGCCUACAAGAGG
..(((........((((...((((.....))))...)))).......(((...(((....(((.......))).....))))))..)))..((((((((((.(....).)))))))).)) ( -33.50)
>consensus
CACCUCAAAGACAUCCCAAAGGCACAAGUCGCCAAAGGGAAUAAAAAGAAAAUGACGCAUACAUUAAUGUUCUCCUUAGGACGCCCAGACAACCUUGUAGG_CCUGAGGCCUACAAGGGG
.............((((...(((.......)))...))))....................................................(((((((((.((...))))))))))).. (-24.45 = -24.70 +   0.25) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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