Structure #72678

Summary

Genome/Assembly hg17
Chromosome/Contig chr16
Strand +
Position 978,079 - 978,167
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 80.3
Columns 88
Mean single MFE -42.65
Consensus MFE -32.62
Combinations/base pair 35 / 25 = 1.40
SCI 0.76
z-score -3.16
RNA class probability 0.999185

This structure is part of cluster 37931

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 88
 Columns: 88
 Strand: +
 Mean pairwise identity:  80.30
 Mean single sequence MFE: -42.65
 Consensus MFE: -32.62
 Energy contribution: -33.12
 Covariance contribution:   0.50
 Mean z-score:  -3.16
 Structure conservation index:   0.76
 SVM decision value:   3.42
 SVM RNA-class probability: 0.999185
 Prediction: RNA

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>hg17.chr16/978079-978167
GCUUUGGGGCUUGCCAGGUUCCCAGGGACUGGGAGGCCCUGCCAGUUUUGUGUGGACUUGGCAGGGCUGCUGUGAGUUAACUCCUGGG
.((((((((((.....)).)))))))).(..(((((((((((((((((.....)))).))))))))).((.....))...))))..). ( -41.60)
>mm5.chr17/69397002-69396914
GCUUUGGGGCUUGCCAGGUUCCCAAGGGCCGGGUGGCCCUGCCAGUUCUGUUGGAACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG
((((.(((((((((((((((((..((((((....))))))..((....))..))))))))))))))).)).))))............. ( -46.10)
>rn3.chr10/95915477-95915389
GCUUUGAGGCUUGCCAGGUUCCCAAGGGCCGGGUGGCCCUGCCAGUCCUGUUGGGACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG
((((.((((((((((((((.((((((((((....))))))..((....)).))))))))))))))))))..))))............. ( -47.20)
>canFam1.chr6/37814173-37814090
GCCGGGCCCUGCCAGGCUCCCCAGGGCUGCAGGCUCUGCCAGUUUUGUUUGCACUUGGAGGGGCUCCUGCGUGGUAACCUGGG
.(((((..(..((((((((((((((..(((((((............)))))))))))).)))))..))).)..)...))))). ( -35.70)
>consensus
GCUUUGGGGCUUGCCAGGUUCCCAAGGGCCGGGAGGCCCUGCCAGUUCUGUUGGGACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG
.....(((((((((((((((((..((((((((.........))))))))...)))))))))))))))))................... (-32.62 = -33.12 +   0.50) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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