Structure #72678
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr16 |
| Strand | + |
| Position | 978,079 - 978,167 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 80.3 |
| Columns | 88 |
| Mean single MFE | -42.65 |
| Consensus MFE | -32.62 |
| Combinations/base pair | 35 / 25 = 1.40 |
| SCI | 0.76 |
| z-score | -3.16 |
| RNA class probability | 0.999185 |
This structure is part of cluster 37931
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 88 Columns: 88 Strand: + Mean pairwise identity: 80.30 Mean single sequence MFE: -42.65 Consensus MFE: -32.62 Energy contribution: -33.12 Covariance contribution: 0.50 Mean z-score: -3.16 Structure conservation index: 0.76 SVM decision value: 3.42 SVM RNA-class probability: 0.999185 Prediction: RNA ###################################################################### >hg17.chr16/978079-978167 GCUUUGGGGCUUGCCAGGUUCCCAGGGACUGGGAGGCCCUGCCAGUUUUGUGUGGACUUGGCAGGGCUGCUGUGAGUUAACUCCUGGG .((((((((((.....)).)))))))).(..(((((((((((((((((.....)))).))))))))).((.....))...))))..). ( -41.60) >mm5.chr17/69397002-69396914 GCUUUGGGGCUUGCCAGGUUCCCAAGGGCCGGGUGGCCCUGCCAGUUCUGUUGGAACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG ((((.(((((((((((((((((..((((((....))))))..((....))..))))))))))))))).)).))))............. ( -46.10) >rn3.chr10/95915477-95915389 GCUUUGAGGCUUGCCAGGUUCCCAAGGGCCGGGUGGCCCUGCCAGUCCUGUUGGGACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG ((((.((((((((((((((.((((((((((....))))))..((....)).))))))))))))))))))..))))............. ( -47.20) >canFam1.chr6/37814173-37814090 GCCGGGCCCUGCCAGGCUCCCCAGGGCUGCAGGCUCUGCCAGUUUUGUUUGCACUUGGAGGGGCUCCUGCGUGGUAACCUGGG .(((((..(..((((((((((((((..(((((((............)))))))))))).)))))..))).)..)...))))). ( -35.70) >consensus GCUUUGGGGCUUGCCAGGUUCCCAAGGGCCGGGAGGCCCUGCCAGUUCUGUUGGGACUUGGCAAGCCUCCUGAGUAUUAACUCCUGGG .....(((((((((((((((((..((((((((.........))))))))...)))))))))))))))))................... (-32.62 = -33.12 + 0.50)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
