Structure #74287
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr16 |
Strand | + |
Position | 26,105,170 - 26,105,270 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 77.81 |
Columns | 120 |
Mean single MFE | -28.88 |
Consensus MFE | -24.35 |
Combinations/base pair | 44 / 32 = 1.38 |
SCI | 0.84 |
z-score | -3.33 |
RNA class probability | 0.99983 |
This structure is part of cluster 38888
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 77.81 Mean single sequence MFE: -28.88 Consensus MFE: -24.35 Energy contribution: -22.47 Covariance contribution: -1.88 Mean z-score: -3.33 Structure conservation index: 0.84 SVM decision value: 4.19 SVM RNA-class probability: 0.999830 Prediction: RNA ###################################################################### >hg17.chr16/26105170-26105270 GAUAUCUAAUUUUACAGAUCAUGGUUUUGGAGAAGAAAACAUGUCACCCCAGGAGUGAGUGGGAAAUUACUCAGUUCUGGAGAGAGGGAAAUGUCAAGAC (((((((..((((...((.((((.((((......)))).))))))...((((((.(((((((....))))))).))))))))))..)))..))))..... ( -27.10) >mm5.chr7/111951914-111952012 GACAUGUAAUUUUACAGAUCAUGGUUUUAAAGAAAAAUGUGUCACCUCAGAAGUGAGUAGGAAAUUAUUCACUUUUGGAGAGAGAGAAAUGUCAAGAC (((((....((((...((((((..(((....)))..))).))).(..(((((((((((((....)))))))))))))..).))))...)))))..... ( -26.00) >rn3.chr1/183530649-183530747 GACAUGCAAUUUUACAGAUCAUGGUUUUGGAGAAGAAUGUGUCACCCCAGAAGUGAGUAGGAAAUUAUUCACUUUUGGAGAGAGGGAAAUGUCAAGAC ((((((((.((((.((((.......))))...)))).))).((.(.((((((((((((((....)))))))))))))).).)).....)))))..... ( -27.90) >canFam1.chr6/57361690-57361570 GACAUCUAAUUUUACAGAUCAUGGUUUUGGAGGAAAAAAACCAAACAAACAAACAAACCACAUCACCCCAGAAGCGAAUGGGAAAUUGUUCACUUCUGGAGAGAUGGGCAUGUCAAGACA (((((................(((((((........)))))))..............((.((((.(.(((((((.(((..(....)..))).))))))).).)))))).)))))...... ( -34.50) >consensus GACAUCUAAUUUUACAGAUCAUGGUUUUGGAGA__AAAA___________________CAUGUCACCCCAGAAGUGAGUAGGAAAUUAUUCACUUCUGGAGAGAGGGAAAUGUCAAGAC_ (((((....(((((.((((....)))))))))............................(.((.(.((((((((((((((....)))))))))))))).).)).)...)))))...... (-24.35 = -22.47 + -1.88)