Structure #74287

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	26,105,170 - 26,105,270
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.81
Columns	120
Mean single MFE	-28.88
Consensus MFE	-24.35
Combinations/base pair	44 / 32 = 1.38
SCI	0.84
z-score	-3.33
RNA class probability	0.99983

This structure is part of cluster 38888

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.81
 Mean single sequence MFE: -28.88
 Consensus MFE: -24.35
 Energy contribution: -22.47
 Covariance contribution:  -1.88
 Mean z-score:  -3.33
 Structure conservation index:   0.84
 SVM decision value:   4.19
 SVM RNA-class probability: 0.999830
 Prediction: RNA

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>hg17.chr16/26105170-26105270
GAUAUCUAAUUUUACAGAUCAUGGUUUUGGAGAAGAAAACAUGUCACCCCAGGAGUGAGUGGGAAAUUACUCAGUUCUGGAGAGAGGGAAAUGUCAAGAC
(((((((..((((...((.((((.((((......)))).))))))...((((((.(((((((....))))))).))))))))))..)))..))))..... ( -27.10)
>mm5.chr7/111951914-111952012
GACAUGUAAUUUUACAGAUCAUGGUUUUAAAGAAAAAUGUGUCACCUCAGAAGUGAGUAGGAAAUUAUUCACUUUUGGAGAGAGAGAAAUGUCAAGAC
(((((....((((...((((((..(((....)))..))).))).(..(((((((((((((....)))))))))))))..).))))...)))))..... ( -26.00)
>rn3.chr1/183530649-183530747
GACAUGCAAUUUUACAGAUCAUGGUUUUGGAGAAGAAUGUGUCACCCCAGAAGUGAGUAGGAAAUUAUUCACUUUUGGAGAGAGGGAAAUGUCAAGAC
((((((((.((((.((((.......))))...)))).))).((.(.((((((((((((((....)))))))))))))).).)).....)))))..... ( -27.90)
>canFam1.chr6/57361690-57361570
GACAUCUAAUUUUACAGAUCAUGGUUUUGGAGGAAAAAAACCAAACAAACAAACAAACCACAUCACCCCAGAAGCGAAUGGGAAAUUGUUCACUUCUGGAGAGAUGGGCAUGUCAAGACA
(((((................(((((((........)))))))..............((.((((.(.(((((((.(((..(....)..))).))))))).).)))))).)))))...... ( -34.50)
>consensus
GACAUCUAAUUUUACAGAUCAUGGUUUUGGAGA__AAAA___________________CAUGUCACCCCAGAAGUGAGUAGGAAAUUAUUCACUUCUGGAGAGAGGGAAAUGUCAAGAC_
(((((....(((((.((((....)))))))))............................(.((.(.((((((((((((((....)))))))))))))).).)).)...)))))...... (-24.35 = -22.47 +  -1.88) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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