Structure #74288

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	-
Position	26,105,170 - 26,105,270
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.81
Columns	120
Mean single MFE	-22.42
Consensus MFE	-15.6
Combinations/base pair	28 / 25 = 1.12
SCI	0.7
z-score	-2.49
RNA class probability	0.995033

This structure is part of cluster 38888

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.81
 Mean single sequence MFE: -22.43
 Consensus MFE: -15.60
 Energy contribution: -18.35
 Covariance contribution:   2.75
 Mean z-score:  -2.49
 Structure conservation index:   0.70
 SVM decision value:   2.53
 SVM RNA-class probability: 0.995033
 Prediction: RNA

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>hg17.chr16/26105270-26105170
GUCUUGACAUUUCCCUCUCUCCAGAACUGAGUAAUUUCCCACUCACUCCUGGGGUGACAUGUUUUCUUCUCCAAAACCAUGAUCUGUAAAAUUAGAUAUC
...............((.((((((...(((((........)))))...)))))).))((((((((.......)))).))))(((((......)))))... ( -19.80)
>mm5.chr7/111952012-111951914
GUCUUGACAUUUCUCUCUCUCCAAAAGUGAAUAAUUUCCUACUCACUUCUGAGGUGACACAUUUUUCUUUAAAACCAUGAUCUGUAAAAUUACAUGUC
.....(((((.....((.(..((.((((((.((......)).)))))).))..).))..........................(((....)))))))) ( -12.20)
>rn3.chr1/183530747-183530649
GUCUUGACAUUUCCCUCUCUCCAAAAGUGAAUAAUUUCCUACUCACUUCUGGGGUGACACAUUCUUCUCCAAAACCAUGAUCUGUAAAAUUGCAUGUC
.....(((((.....((.(((((.((((((.((......)).)))))).))))).))..........................(((....)))))))) ( -17.50)
>canFam1.chr6/57361570-57361690
UGUCUUGACAUGCCCAUCUCUCCAGAAGUGAACAAUUUCCCAUUCGCUUCUGGGGUGAUGUGGUUUGUUUGUUUGUUUGGUUUUUUUCCUCCAAAACCAUGAUCUGUAAAAUUAGAUGUC
......((((.(((((((.(((((((((((((..........))))))))))))).)))).))).))))........(((((((........)))))))..(((((......)))))... ( -40.20)
>consensus
_GUCUUGACAUUUCCCUCUCUCCAAAAGUGAAUAAUUUCCCACUCACUUCUGGGGUGACACA___________________UUUU__UCUCCAAAACCAUGAUCUGUAAAAUUACAUGUC
......(((.......((.(((((((((((((((......))))))))))))))).))...........................................(((((......)))))))) (-15.60 = -18.35 +   2.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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