Structure #74774

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	31,943,867 - 31,943,983
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.55
Columns	120
Mean single MFE	-41
Consensus MFE	-31.15
Combinations/base pair	30 / 28 = 1.07
SCI	0.76
z-score	-2.4
RNA class probability	0.973998

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.55
 Mean single sequence MFE: -41.00
 Consensus MFE: -31.15
 Energy contribution: -33.52
 Covariance contribution:   2.38
 Mean z-score:  -2.40
 Structure conservation index:   0.76
 SVM decision value:   1.72
 SVM RNA-class probability: 0.973998
 Prediction: RNA

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>hg17.chr16/31943867-31943983
CUGGGGGCAAGUGAAGUAGCAAGCAGAGAGUAAUGGAGUGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAGUCAGGGGAUCUCUGUACAGCCAAAUCAAACCAGACCA
((((.(((..((......))..(((((((....(((..(((..((.((((((((........))))))))))..)))..))).....)))))))...)))........)))).... ( -50.40)
>mm5.chr11/97181576-97181682
UGGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGGCCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUG
(((.(((..((........))......(((((...((((.(((((((......))))))).))))....(....).))))).....)))...))).......... ( -33.20)
>rn3.chr10/86270551-86270656
UGGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGGCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUG
(((.(((..((........))......(((((...((((.(((((((.....))))))).))))....(....).))))).....)))...))).......... ( -33.00)
>canFam1.chr9/37313111-37312991
UGGGGGCAAGCGAAAAGUAGCAAGCAAAGAGUAAUGGAGUGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAUCAGGGGGGGGUCUCUGUACAGCCAAAUCAAACCAAACCA
(((.(((..((........)).........(((.(((((.((((((.((((((....)).)))).))))))((((((......))))))..)))))))).)))...))).......... ( -47.40)
>consensus
_UGGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGA___________CACCCCCCCCUCCCCUCCCAAGCCAGGGG___UCUCUGUACAGCCAAAUCAAACCAAACCA
.(((.(((..((........))..............((((.(((((((((((.........))))))))))).)))).....(((((.....)))))....)))...))).......... (-31.15 = -33.52 +   2.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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