Structure #74776

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	-
Position	31,943,867 - 31,943,983
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.55
Columns	120
Mean single MFE	-43.55
Consensus MFE	-34.64
Combinations/base pair	38 / 34 = 1.12
SCI	0.8
z-score	-2.27
RNA class probability	0.964449

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.55
 Mean single sequence MFE: -43.55
 Consensus MFE: -34.64
 Energy contribution: -36.07
 Covariance contribution:   1.44
 Mean z-score:  -2.27
 Structure conservation index:   0.80
 SVM decision value:   1.57
 SVM RNA-class probability: 0.964449
 Prediction: RNA

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>hg17.chr16/31943983-31943867
UGGUCUGGUUUGAUUUGGCUGUACAGAGAUCCCCUGACUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCACUCCAUUACUCUCUGCUUGCUACUUCACUUGCCCCCAG
(((...(((.(((..((((....((((((....(......)((((.(((((((((((.((....))))))))))))).)))).....))))))...))))..)))...))).))). ( -51.00)
>mm5.chr11/97181682-97181576
CAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGGCCCCUCCACUCCAUUUCUCUUUGCUUGCUACUCUUUGCUUGCCCCCA
................(((.(((.((((......(((..((((((((((..(((((....))))).)))).))))))...))).....)))).)))..))).... ( -37.40)
>rn3.chr10/86270656-86270551
CAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGCCCCUCCACUCCAUUUCUCUUUGCUUGCUACUCUUUGCUUGCCCCCA
..((..(((..((..((((.(((.(((((((...))....((((.(((((((.....))))))).))))...))))).)))..)))).))...))).))..... ( -35.30)
>canFam1.chr9/37312991-37313111
UGGUUUGGUUUGAUUUGGCUGUACAGAGACCCCCCCCUGAUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCACUCCAUUACUCUUUGCUUGCUACUUUUCGCUUGCCCCCA
.(((..(((..((..((((.(((.((((...((.(((.....))).))(((((((((((.((....))))))))))))).........)))).)))..))))..))..))).))).... ( -50.50)
>consensus
CAGUUUGGUUUGAUUUGGCUGUACAGAGA___CCCCUGGCUUGGGAGGGGAGGGGGAAGGG___________CCCCUCCACUCCAUUACUCUUUGCUUGCUACUCUUCGCUUGCCCCCA_
......(((.(((..((((.(((.((((....(((((.....))).))(((((((((((.(.....).))))))))))).........)))).)))..))))....)))...)))..... (-34.64 = -36.07 +   1.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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