Structure #74777

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	31,943,905 - 31,944,023
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.33
Columns	120
Mean single MFE	-41.15
Consensus MFE	-24.81
Combinations/base pair	29 / 27 = 1.07
SCI	0.6
z-score	-2.87
RNA class probability	0.99868

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.33
 Mean single sequence MFE: -41.14
 Consensus MFE: -24.81
 Energy contribution: -28.18
 Covariance contribution:   3.38
 Mean z-score:  -2.87
 Structure conservation index:   0.60
 SVM decision value:   3.18
 SVM RNA-class probability: 0.998680
 Prediction: RNA

######################################################################

>hg17.chr16/31943905-31944023
UGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAGUCAGGGGAUCUCUGUACAGCCAAAUCAAACCAGACCAUUUCACUGGGACCACAGAAGCCAGGCCGACUUGCCCGCCC
.((((((..(((((((........)))))))))))))((((((.((((...(((((...(......)...((((.........))))....)))))..))...))))))))....... ( -41.40)
>mm5.chr11/97181616-97181719
UGGAGGGGCCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUCCACAGGGACUACAGAAACCAGGCCACACGCCUGU
.(((((((......)))))))...(((......)))((((((((..(((................)))..)))))))).........(((((.....))))). ( -37.29)
>rn3.chr10/86270591-86270693
UGGAGGGGCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUUCACGGGGACUAUGGACACCAGGCCAUACGCCUGU
.(((((((.....)))))))........((((..(((((((((..(((................)))..))))))))).))).)..(((((.....))))). ( -38.19)
>canFam1.chr9/37313149-37313031
UGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAUCAGGGGGGGGUCUCUGUACAGCCAAAUCAAACCAAACCAUUUCACUGGACCACAGAAGCCAGGCCGAUGUGCCCAUC
.((((((.((((((....)).)))).))))))((((((.....))))))((..(((((....(((.....................)))...)))))..)).(((......))).... ( -47.70)
>consensus
UGGAGGGA___________CACCCCCCCCUCCCCUCCCAAGCCAGGGG___UCUCUGUACAGCCAAAUCAAACCAAACCACUUCACUGGGACCACAGAAACCAGGCC_ACACGCCCG__C
.(((((((((((.........)))))))))))...(((......)))......((((((...((........................))..))))))...(((((......)))))... (-24.81 = -28.18 +   3.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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