Structure #74778

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	-
Position	31,943,905 - 31,944,023
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.33
Columns	120
Mean single MFE	-47.5
Consensus MFE	-38.62
Combinations/base pair	45 / 37 = 1.22
SCI	0.81
z-score	-1.46
RNA class probability	0.813034

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.33
 Mean single sequence MFE: -47.50
 Consensus MFE: -38.62
 Energy contribution: -40.12
 Covariance contribution:   1.50
 Mean z-score:  -1.46
 Structure conservation index:   0.81
 SVM decision value:   0.65
 SVM RNA-class probability: 0.813034
 Prediction: RNA

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>hg17.chr16/31944023-31943905
GGGCGGGCAAGUCGGCCUGGCUUCUGUGGUCCCAGUGAAAUGGUCUGGUUUGAUUUGGCUGUACAGAGAUCCCCUGACUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCA
(..(((.((((((((((.((((((..((....))..))...)))).)).)))))))).)))..).....(((((......))).))(((((((((((.((....))))))))))))). ( -52.80)
>mm5.chr11/97181719-97181616
ACAGGCGUGUGGCCUGGUUUCUGUAGUCCCUGUGGAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGGCCCCUCCA
.(((((.....)))))(((((((((..((..((.((((......)))).))..))...)))))))))(((......)))...(((((((......))))))). ( -45.00)
>rn3.chr10/86270693-86270591
ACAGGCGUAUGGCCUGGUGUCCAUAGUCCCCGUGAAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGCCCCUCCA
.(((((.....)))))....((((((((...((.((((......)))).))..))))))........(((......))).))(((((((.....))))))). ( -38.30)
>canFam1.chr9/37313031-37313149
GAUGGGCACAUCGGCCUGGCUUCUGUGGUCCAGUGAAAUGGUUUGGUUUGAUUUGGCUGUACAGAGACCCCCCCCUGAUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCA
...((((......))))((..((((((...((((.((((.(.......).)))).))))))))))..))((.(((.....))).))(((((((((((.((....))))))))))))). ( -53.90)
>consensus
A__CAGGCAUAU_GGCCUGGCUUCUGUAGUCCCAGUGAAACAGUUUGGUUUGAUUUGGCUGUACAGAGA___CCCCUGGCUUGGGAGGGGAGGGGGAAGGG___________CCCCUCCA
...(((((......)))))...((((((..((.(((.((((......)))).))).))...)))))).....(((((.....))).))(((((((((((.(.....).))))))))))). (-38.62 = -40.12 +   1.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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