Structure #74779

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	31,943,945 - 31,944,062
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.66
Columns	120
Mean single MFE	-38.02
Consensus MFE	-24.08
Combinations/base pair	29 / 25 = 1.16
SCI	0.63
z-score	-2
RNA class probability	0.832229

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.66
 Mean single sequence MFE: -38.02
 Consensus MFE: -24.08
 Energy contribution: -25.08
 Covariance contribution:   1.00
 Mean z-score:  -2.00
 Structure conservation index:   0.63
 SVM decision value:   0.72
 SVM RNA-class probability: 0.832229
 Prediction: RNA

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>hg17.chr16/31943945-31944062
GUCAGGGGAUCUCUGUACAGCCAAAUCAAACCAGACCAUUUCACUGGGACCACAGAAGCCAGGCCGACUUGCCCGCCCCCCCAGUCCCCUCCCCCGCCAAAACAGUGGCCAGGAAGA
...(((((((.(((((...(......)...((((.........))))....))))).((..(((......))).)).......))))))).((..((((......))))..)).... ( -28.40)
>mm5.chr11/97181645-97181756
GCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUCCACAGGGACUACAGAAACCAGGCCACACGCCUGUCCCCAGCCCCUCCCCUGCCAGACAGUGGCCAGGGAGA
((..(((((((((((..(((................)))..)))))))).........(((((.....))))).)))..))..(((((..((((.....))))..))))). ( -40.59)
>rn3.chr10/86270619-86270730
GCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUUCACGGGGACUAUGGACACCAGGCCAUACGCCUGUCCCCAGCCCCUCCCUUGCCAGACAGCGGCCAGGGAGA
....(((((((((((..(((................)))..))))))))..(((....(((((.....)))))...))).)))((((((.(((.......))).)))))). ( -41.39)
>canFam1.chr9/37313189-37313071
UCAGGGGGGGGUCUCUGUACAGCCAAAUCAAACCAAACCAUUUCACUGGACCACAGAAGCCAGGCCGAUGUGCCCAUCCUCUAGCCUCCCUCCGCUGCCAAAACAGCGGCCAGGGAGA
...((((((((..(((((....(((.....................)))...)))))..)).(((......)))..))))))...((((((((((((......))))))..)))))). ( -41.70)
>consensus
GCCAGGGG___UCUCUGUACAGCCAAAUCAAACCAAACCACUUCACUGGGACCACAGAAACCAGGCC_ACACGCCCG__CCCCCAG__CCCCUCCCCUGCC_AAACAGCGGCCAGGGAGA
....((((.....((((((...((........................))..))))))...(((((......)))))...)))).......(((((..(((........)))..))))). (-24.08 = -25.08 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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