Structure #74781

Summary

Genome/Assembly hg17
Chromosome/Contig chr16
Strand -
Position 31,943,945 - 31,944,062
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 79.66
Columns 120
Mean single MFE -48.8
Consensus MFE -36.12
Combinations/base pair 42 / 34 = 1.24
SCI 0.74
z-score -1.57
RNA class probability 0.622027

This structure is part of cluster 39122

Alignment

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.66
 Mean single sequence MFE: -48.80
 Consensus MFE: -36.12
 Energy contribution: -36.12
 Covariance contribution:   0.00
 Mean z-score:  -1.57
 Structure conservation index:   0.74
 SVM decision value:   0.18
 SVM RNA-class probability: 0.622028
 Prediction: RNA

######################################################################

>hg17.chr16/31944062-31943945
UCUUCCUGGCCACUGUUUUGGCGGGGGAGGGGACUGGGGGGGCGGGCAAGUCGGCCUGGCUUCUGUGGUCCCAGUGAAAUGGUCUGGUUUGAUUUGGCUGUACAGAGAUCCCCUGAC
.((((((.((((......)))).))))))(((((((.((((((((((......)))).)))))).))))))).........(((.((.....((((......)))).....)).))) ( -49.80)
>mm5.chr11/97181756-97181645
UCUCCCUGGCCACUGUCUGGCAGGGGAGGGGCUGGGGACAGGCGUGUGGCCUGGUUUCUGUAGUCCCUGUGGAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGC
(((((((.((((.....)))).))))))).((..(((.(((((.....)))))(((((((((..((..((.((((......)))).))..))...))))))))))))..)) ( -53.30)
>rn3.chr10/86270730-86270619
UCUCCCUGGCCGCUGUCUGGCAAGGGAGGGGCUGGGGACAGGCGUAUGGCCUGGUGUCCAUAGUCCCCGUGAAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGC
(((((((.((((.....)))).))))))).((..(((.(((((.....)))))((.((.((((((...((.((((......)))).))..))))))...)).)))))..)) ( -46.00)
>canFam1.chr9/37313071-37313189
UCUCCCUGGCCGCUGUUUUGGCAGCGGAGGGAGGCUAGAGGAUGGGCACAUCGGCCUGGCUUCUGUGGUCCAGUGAAAUGGUUUGGUUUGAUUUGGCUGUACAGAGACCCCCCCCUGA
(((((((..(((((((....)))))))))))))).(((.((..((((......))))((..((((((...((((.((((.(.......).)))).))))))))))..))..)).))). ( -46.10)
>consensus
UCUCCCUGGCCACUGUCU_GGCAGGGGAGGGG__CUGGGGA__CAGGCAUAU_GGCCUGGCUUCUGUAGUCCCAGUGAAACAGUUUGGUUUGAUUUGGCUGUACAGAGA___CCCCUGGC
(((((((.(((........))).)))))))......((((...(((((......)))))...((((((..((.(((.((((......)))).))).))...)))))).....)))).... (-36.12 = -36.12 +   0.00) 

	

[Download RNAz result]

Consensus structure

Secondary structure graph

Secondary structure

[PS | PDF]

Montain plot

Secondary structure

[PS | PDF]

Dotplot

Secondary structure

[PS | PDF]