Structure #74782

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	31,943,983 - 31,944,092
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.98
Columns	120
Mean single MFE	-34.34
Consensus MFE	-21.75
Combinations/base pair	26 / 23 = 1.13
SCI	0.63
z-score	-2.09
RNA class probability	0.896629

This structure is part of cluster 39122

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  67.70
 Mean single sequence MFE: -34.34
 Consensus MFE: -21.75
 Energy contribution: -23.25
 Covariance contribution:   1.50
 Mean z-score:  -2.09
 Structure conservation index:   0.63
 SVM decision value:   2.93
 SVM RNA-class probability: 0.997776
 Prediction: RNA

######################################################################

>hg17.chr16/31943983-31944092
UUUCACUGGGACCACAGAAGCCAGGCCGACUUGCCCGCCCCCCCAGUCCCCUCCCCCGCCAAAACAGUGGCCAGGAAGAGUGCCGUGGUUUUCUUUUUUCUUUUUUAAA
..((((.(((((.......((..(((......))).)).......)))))(((..((((((......))))..))..)))....))))..................... ( -24.04)
>mm5.chr11/97181682-97181795
CUCCACAGGGACUACAGAAACCAGGCCACACGCCUGUCCCCAGCCCCUCCCCUGCCAGACAGUGGCCAGGGAGAGUGUGCUGUGGUUUUCUUUUUUUUUUUUUCUUUUUUAAA
..((((.(((((....(....)((((.....))))))))).((((.(((((((((((.....))).))))).))).).)))))))............................ ( -36.00)
>rn3.chr10/86270656-86270770
CUUCACGGGGACUAUGGACACCAGGCCAUACGCCUGUCCCCAGCCCCUCCCUUGCCAGACAGCGGCCAGGGAGAGUGUGCUGUGGUUUUCUUUUUUUUUUUUUUCUUUUUUAAA
......(..(((((((((((((((((.....)))))..........((((((.(((.......))).)))))).)))).))))))))..)........................ ( -39.20)
>canFam1.chr9/37313229-37313111
UUUCACUGGACCACAGAAGCCAGGCCGAUGUGCCCAUCCUCUAGCCUCCCUCCGCUGCCAAAACAGCGGCCAGGGAGAGAGCGCCGUGGUUUUCUUUUUUUUUUUUUUCUUUUUUAAA
.....(((.....)))(((((((((.((((....))))((((...((((((((((((......))))))..)))))))))).))).)))))).......................... ( -38.10)
>consensus
CUUCACUGGGACCACAGAAACCAGGCC_ACACGCCCG__CCCCCAG__CCCCUCCCCUGCC_AAACAGCGGCCAGGGAGAGUGUGCCGUGGUUUUC_UUUUUUUUUUUUUCUUUUUUAAA
.......((((((((((....(((((......)))))..............(((((..(((........)))..)))))......))))))))))......................... (-21.75 = -23.25 +   1.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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