Structure #74783
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr16 |
Strand | - |
Position | 31,943,983 - 31,944,092 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 78.98 |
Columns | 120 |
Mean single MFE | -44.23 |
Consensus MFE | -32.75 |
Combinations/base pair | 34 / 25 = 1.36 |
SCI | 0.74 |
z-score | -3.84 |
RNA class probability | 0.999888 |
This structure is part of cluster 39122
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 67.70 Mean single sequence MFE: -44.23 Consensus MFE: -32.75 Energy contribution: -31.38 Covariance contribution: -1.38 Mean z-score: -3.84 Structure conservation index: 0.74 SVM decision value: 5.43 SVM RNA-class probability: 0.999986 Prediction: RNA ###################################################################### >hg17.chr16/31944092-31943983 UUUAAAAAAGAAAAAAGAAAACCACGGCACUCUUCCUGGCCACUGUUUUGGCGGGGGAGGGGACUGGGGGGGCGGGCAAGUCGGCCUGGCUUCUGUGGUCCCAGUGAAA ...........................((((((((((.((((......)))).))))))(((((((.((((((((((......)))).)))))).)))))))))))... ( -46.40) >mm5.chr11/97181795-97181682 UUUAAAAAAGAAAAAAAAAAAAAGAAAACCACAGCACACUCUCCCUGGCCACUGUCUGGCAGGGGAGGGGCUGGGGACAGGCGUGUGGCCUGGUUUCUGUAGUCCCUGUGGAG ............................((((((......((((((.((((.....)))).))))))((((((.((((((((.....)))))...))).)))))))))))).. ( -45.70) >rn3.chr10/86270770-86270656 UUUAAAAAAGAAAAAAAAAAAAAAGAAAACCACAGCACACUCUCCCUGGCCGCUGUCUGGCAAGGGAGGGGCUGGGGACAGGCGUAUGGCCUGGUGUCCAUAGUCCCCGUGAAG ..............................((((((...((((((((.((((.....)))).)))))))))))((((((((((.....))))((...))...)))))))))... ( -42.40) >canFam1.chr9/37313111-37313229 UUUAAAAAAGAAAAAAAAAAAAAAGAAAACCACGGCGCUCUCUCCCUGGCCGCUGUUUUGGCAGCGGAGGGAGGCUAGAGGAUGGGCACAUCGGCCUGGCUUCUGUGGUCCAGUGAAA ............................((((((((.(((((((((((.(((......)))))).)))))))))))(((((..((((......))))..))))))))))......... ( -42.40) >consensus UUUAAAAAAGAAAAAAAAAAAAA_GAAAACCACAGCACACUCUCCCUGGCCACUGUCU_GGCAGGGGAGGGG__CUGGGGA__CAGGCAUAU_GGCCUGGCUUCUGUAGUCCCAGUGAAA ..............................(((......((((((((.(((........))).))))))))...(((.(((..(((((......)))))...))).))).....)))... (-32.75 = -31.38 + -1.38)