Structure #74842

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	33,595,088 - 33,595,198
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.97
Columns	120
Mean single MFE	-44.35
Consensus MFE	-37.96
Combinations/base pair	39 / 28 = 1.39
SCI	0.86
z-score	-3.76
RNA class probability	0.999892

This structure is part of cluster 39159

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  66.24
 Mean single sequence MFE: -44.35
 Consensus MFE: -37.96
 Energy contribution: -36.90
 Covariance contribution:  -1.06
 Mean z-score:  -3.76
 Structure conservation index:   0.86
 SVM decision value:   4.34
 SVM RNA-class probability: 0.999875
 Prediction: RNA

######################################################################

>hg17.chr16/33595088-33595198
AUUUAAAAAAGAAAAAAGUAAACCACGGCACUCUUCCUGGCCACUGUUUUGGUGGGGGAGGGGGGCUGGGGGGGGCGGGCACGUCUGCCUGGCUUCUGUGGUCCCAGUGA
.......................(((.....(((((((.((((......)))).)))))))(((((((.(((((.((((((....)))))).))))).))))))).))). ( -48.00)
>mm5.chr11/24467173-24467061
AUUUAAAAAAGAAAAAAAAAAAAAGAAAACCACAGCACACUCUCCCUGGCCACUGUCUGGCAGGGGAGGGGCUGGGGACAGGCGUGUGGCCUGGUUUCUGUAGUCCCUGUGG
.............................((((((......((((((.((((.....)))).))))))((((((.((((((((.....)))))...))).)))))))))))) ( -44.60)
>rn3.chr10/24462694-24462581
AUUUAAAAAAGAAAAAAAAAAAAAAGAAAACCACAGCACACUCUCCCUGGCCGCUGUCUGGCAAGGGAGGGGCUGGGGACAGGCGUAUGGCCUGGUGUCCAUAGUCCCCGUGA
...............................((((((...((((((((.((((.....)))).)))))))))))((((((((((.....))))((...))...))))))))). ( -42.40)
>canFam1.chr9/16329588-16329705
AUUUAAAAAAGAAAAAAAAAAAAAAGAAAACCACGGCGCUCUCUCCCUGGCCGCUGUUUUGGCAGCGGAGGGAGGCUAGAGGAUGGGCACAUCGGCCUGGCUUCUGUGGUCCAGUGA
.............................((((((((.(((((((((((.(((......)))))).)))))))))))(((((..((((......))))..))))))))))....... ( -42.40)
>consensus
AUUUAAAAAAGAAAAAA_AAAAAAAGAAAACCACAGCACACUCUCCCUGGCCACUG_UCUGGCAGGGGA__GGGGCUGGGGA___CAGGCACAU_GGCCUGGCUUCUGUAGUCCCAGUGA
...............................(((........((((((.((((......)))).)))))).(((((((.(((...(((((......)))))...))).))))))).))). (-37.96 = -36.90 +  -1.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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