Structure #74844

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	33,595,118 - 33,595,236
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.34
Columns	120
Mean single MFE	-48
Consensus MFE	-40.08
Combinations/base pair	48 / 33 = 1.45
SCI	0.83
z-score	-1.39
RNA class probability	0.617066

This structure is part of cluster 39159

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.34
 Mean single sequence MFE: -48.00
 Consensus MFE: -40.08
 Energy contribution: -37.57
 Covariance contribution:  -2.50
 Mean z-score:  -1.39
 Structure conservation index:   0.83
 SVM decision value:   0.17
 SVM RNA-class probability: 0.617066
 Prediction: RNA

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>hg17.chr16/33595118-33595236
CUCUUCCUGGCCACUGUUUUGGUGGGGGAGGGGGGCUGGGGGGGGCGGGCACGUCUGCCUGGCUUCUGUGGUCCCAGUGAAAUGGUCUGGUUUGAUUUGGCUGUACAGAGAUCCCCUG
((((((((.((((......)))).)))))))).....(((((((.((((((....)))))).)(((((((....((((.((((.(.......).)))).))))))))))).)))))). ( -50.70)
>mm5.chr11/24467210-24467100
CUCUCCCUGGCCACUGUCUGGCAGGGGAGGGGCUGGGGACAGGCGUGUGGCCUGGUUUCUGUAGUCCCUGUGGAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUG
((((((((.((((.....)))).))))))))...((((.(((((.....)))))(((((((((..((..((.((((......)))).))..))...))))))))))))). ( -51.30)
>rn3.chr10/24462731-24462621
CUCUCCCUGGCCGCUGUCUGGCAAGGGAGGGGCUGGGGACAGGCGUAUGGCCUGGUGUCCAUAGUCCCCGUGAAGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUG
...(((((.((((.....)))).)))))((((((((((((((((.....))))((...))...))))))(((.(((.(((......)))...))).)))..)).)))).. ( -45.00)
>canFam1.chr9/16329628-16329745
CUCUCCCUGGCCGCUGUUUUGGCAGCGGAGGGAGGCUAGAGGAUGGGCACAUCGGCCUGGCUUCUGUGGUCCAGUGAAAUGGUUUGGUUUGAUUUGGCUGUACAGAGACCCCCCCCU
.(((((((..(((((((....))))))))))))))....(((..((((......))))((..((((((...((((.((((.(.......).)))).))))))))))..))....))) ( -45.00)
>consensus
CUCUCCCUGGCCACUG_UCUGGCAGGGGA__GGGGCUGGGGA___CAGGCACAU_GGCCUGGCUUCUGUAGUCCCAGUGAAACAGUUUGGUUUGAUUUGGCUGUACAGAGA___CCCCUG
((((((((.((((......)))).)))))..(((((((.(((...(((((......)))))...))).)))))))......((((((...........))))))...))).......... (-40.08 = -37.57 +  -2.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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