Structure #74847
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr16 |
| Strand | - |
| Position | 33,595,158 - 33,595,276 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 75.5 |
| Columns | 120 |
| Mean single MFE | -39.35 |
| Consensus MFE | -22.29 |
| Combinations/base pair | 30 / 27 = 1.11 |
| SCI | 0.57 |
| z-score | -2.73 |
| RNA class probability | 0.996377 |
This structure is part of cluster 39159
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.50 Mean single sequence MFE: -39.35 Consensus MFE: -22.29 Energy contribution: -25.48 Covariance contribution: 3.19 Mean z-score: -2.73 Structure conservation index: 0.57 SVM decision value: 2.69 SVM RNA-class probability: 0.996377 Prediction: RNA ###################################################################### >hg17.chr16/33595276-33595158 GAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAGUCAGGGGAUCUCUGUACAGCCAAAUCAAACCAGACCAUUUCACUGGGACCACAGAAGCCAGGCAGACGUGCCCGCCCCC ..((((((((((((........))))))))..))))......(((.((.(((((...((.........((((.........))))..........))...))))).)).)))...... ( -43.41) >mm5.chr11/24467137-24467239 GAGGGGCCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUCCACAGGGACUACAGAAACCAGGCCACACGCCUGUC ((((((......))))))((((........))))((((((((..(((................)))..)))))))).........(((((.....))))).. ( -34.69) >rn3.chr10/24462658-24462759 GAGGGGCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCUUCACGGGGACUAUGGACACCAGGCCAUACGCCUGUC ((((((.....)))))).........((((..(((((((((..(((................)))..))))))))).))).)..(((((.....))))).. ( -34.89) >canFam1.chr9/16329785-16329668 GAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAUCAGGGGGGGGUCUCUGUACAGCCAAAUCAAACCAAACCAUUUCACUGGACCACAGAAGCCAGGCCGAUGUGCCCAUCC (((((.((((((....)).)))).))))).((((((.....))))))((..(((((....(((.....................)))...)))))..)).(((......)))..... ( -44.40) >consensus GAGGGA___________CACCCCCCCCUCCCCUCCCAAGCCAGGGG___UCUCUGUACAGCCAAAUCAAACCAAACCACUUCACUGGGACCACAGAAACCAGGCC_ACACGCCCG___CC ((((((((((.........))))))))))((((........))))......((((((...((.......................))...))))))...(((((......)))))..... (-22.29 = -25.48 + 3.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
