Structure #74849

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	+
Position	33,595,198 - 33,595,314
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.76
Columns	120
Mean single MFE	-43.35
Consensus MFE	-34.53
Combinations/base pair	34 / 32 = 1.06
SCI	0.8
z-score	-2.04
RNA class probability	0.919017

This structure is part of cluster 39159

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.76
 Mean single sequence MFE: -43.35
 Consensus MFE: -34.53
 Energy contribution: -36.40
 Covariance contribution:   1.87
 Mean z-score:  -2.04
 Structure conservation index:   0.80
 SVM decision value:   1.12
 SVM RNA-class probability: 0.919017
 Prediction: RNA

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>hg17.chr16/33595198-33595314
AAUGGUCUGGUUUGAUUUGGCUGUACAGAGAUCCCCUGACUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCACUCCAUUACUCUCUGCUUGCUACUUCGCUUGCCCCC
...(((..(((..((..((((....((((((....(......)((((.(((((((((((.((....))))))))))))).)))).....))))))...))))..))))).)))... ( -48.60)
>mm5.chr11/24467279-24467173
AGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGGCCCCUCCACUCCAUUUCUCUUUGCUUGCUACUCUUUGCUUGCCCCC
.(((....(((..((..((((.(((.((((((((((.....))).))((((..(((((....))))).))))...))))).)))..)))).))...)))))).... ( -37.90)
>rn3.chr10/24462799-24462694
AGCAGUUUGGUUUGAUUUGGCUGUACAGAGACCCCUGGCUUGGGAGGGGAGGGGGAGGGCCCCUCCACUCCAUUUCUCUUUGCUUGCUACUCUUUGCUUGCCCCC
.(((....(((..((..((((.(((.(((((((...))....((((.(((((((.....))))))).))))...))))).)))..)))).))...)))))).... ( -36.40)
>canFam1.chr9/16329705-16329825
AAUGGUUUGGUUUGAUUUGGCUGUACAGAGACCCCCCCCUGAUUGGGAGGGGAGGGGGGAGUGGUGCCCCCUCCUCCCUCCACUCCAUUACUCUUUGCUUGCUACUUUUCGCUUGCCCCC
...(((..(((..((..((((.(((.((((...((.(((.....))).))(((((((((((.((....))))))))))))).........)))).)))..))))..))..))).)))... ( -50.50)
>consensus
AACAGUUUGGUUUGAUUUGGCUGUACAGAGA___CCCCUGGCUUGGGAGGGGAGGGGGAAGGG___________CCCCUCCACUCCAUUACUCUUUGCUUGCUACUCUUCGCUUGCCCCC
........(((..(...((((.(((.((((....(((((.....))).))(((((((((((.(.....).))))))))))).........)))).)))..)))).......)..)))... (-34.53 = -36.40 +   1.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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