Structure #74850

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	-
Position	33,595,198 - 33,595,314
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.76
Columns	120
Mean single MFE	-40.38
Consensus MFE	-30.81
Combinations/base pair	28 / 27 = 1.04
SCI	0.76
z-score	-2.14
RNA class probability	0.934657

This structure is part of cluster 39159

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.76
 Mean single sequence MFE: -40.38
 Consensus MFE: -30.81
 Energy contribution: -33.38
 Covariance contribution:   2.56
 Mean z-score:  -2.14
 Structure conservation index:   0.76
 SVM decision value:   1.24
 SVM RNA-class probability: 0.934657
 Prediction: RNA

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>hg17.chr16/33595314-33595198
GGGGGCAAGCGAAGUAGCAAGCAGAGAGUAAUGGAGUGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAGUCAGGGGAUCUCUGUACAGCCAAAUCAAACCAGACCAUU
.(((((..((......))..(((((((....(((..(((..((.((((((((........))))))))))..)))..))).....)))))))...)))...((......))))... ( -50.00)
>mm5.chr11/24467173-24467279
GGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGGCCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCU
((.(((..((........))......(((((...((((.(((((((......))))))).))))....(....).))))).....)))...))............. ( -32.50)
>rn3.chr10/24462694-24462799
GGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGGCCCUCCCCCUCCCCUCCCAAGCCAGGGGUCUCUGUACAGCCAAAUCAAACCAAACUGCU
((.(((..((........))......(((((...((((.(((((((.....))))))).))))....(....).))))).....)))...))............. ( -32.30)
>canFam1.chr9/16329825-16329705
GGGGGCAAGCGAAAAGUAGCAAGCAAAGAGUAAUGGAGUGGAGGGAGGAGGGGGCACCACUCCCCCCUCCCCUCCCAAUCAGGGGGGGGUCUCUGUACAGCCAAAUCAAACCAAACCAUU
((.(((..((........)).........(((.(((((.((((((.((((((....)).)))).))))))((((((......))))))..)))))))).)))...))............. ( -46.70)
>consensus
GGGGGCAAGCAAAGAGUAGCAAGCAAAGAGAAAUGGAGUGGAGGGA___________CACCCCCCCCUCCCCUCCCAAGCCAGGGG___UCUCUGUACAGCCAAAUCAAACCAAACCACU
((.(((..((........))..............((((.(((((((((((.........))))))))))).)))).....(((((.....)))))....)))...))............. (-30.81 = -33.38 +   2.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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