Structure #77598
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr16 |
| Strand | - |
| Position | 71,377,350 - 71,377,456 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 81.42 |
| Columns | 114 |
| Mean single MFE | -30.16 |
| Consensus MFE | -22.18 |
| Combinations/base pair | 39 / 25 = 1.56 |
| SCI | 0.74 |
| z-score | -3.01 |
| RNA class probability | 0.996044 |
This structure is part of cluster 40703
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 114 Columns: 114 Strand: + Mean pairwise identity: 81.42 Mean single sequence MFE: -30.16 Consensus MFE: -22.18 Energy contribution: -21.30 Covariance contribution: -0.88 Mean z-score: -3.01 Structure conservation index: 0.74 SVM decision value: 2.65 SVM RNA-class probability: 0.996044 Prediction: RNA ###################################################################### >hg17.chr16/71377456-71377350 CUCCCGUCCUAUAAUCUCCCACUUAAGGUAGCUGCCUUCAUUUCUUAGAGGGAGCUGCAGAAUUAUUUUAUAAAACUAAAGAAAGAAUUUCAAGGGAUUCUAGGGG ......(((((.((((((.........((((((.(((((........)))))))))))......................(((.....)))..)))))).))))). ( -27.00) >mm5.chr8/20415389-20415502 CUCCCAUCCUCUAAUUUCCCACUUAAAGUGGCCGCCUCCACCUUUAUUUCUUGGAGGGUGGCUAUAGAAUUAUUUUGUAAACCUAAAGAAAGGAUUUCAGAGGAUUCUAGCGA .....(((((((.(..(((........(((((((((((((...........)))).))))))))).......(((((......)))))...)))..).)))))))........ ( -30.60) >rn3.chr19/20433994-20434101 UUUCCAUCCUCUAAUUUCCCACUUAAAGUGGUCCCCUUCAUUUCUUGAAGGGUGGCUGCAGAAUUAUUUUAUAAACCUAAAGAAAGGAUUUCAGAGGAUUCUAGGGA .(((((((((((.(..(((........(..((((((((((.....))))))).)))..).......(((((......)))))...)))..).)))))))....)))) ( -33.50) >canFam1.chr5/81539405-81539298 CUCCCACCCUAUAAUCUCCCACUUAAGGUAGCUGCCUUCAUUUCUUAGAGGGUAGCUACAGAAUUAUUUUAUAAAACUAAAGAAAGAAUUUCAAAAGGUUCUAGGGG ......(((((.(((((..........((((((((((((........))))))))))))......................(((.....)))...))))).))))). ( -31.80) >galGal2.chr11_random/388023-388129 CCCAUCCUGUAAUCUUCCACUUAUGGUUGCUACCUUCAUUUCUUAGAGGGUGGUUGCAUAAUUAUUUUAUAAAAACUAAAGAAAGAAGUUCAAAGGGUUUUGGGGG ((((.(((.....((((..(((.((((((((((((((........)))))))))...((((.....))))...))))))))...))))......)))...)))).. ( -27.90) >consensus CUCCCAUCCUAUAAUCUCCCACUUAAGGUAGCUGCCUUCA______UUUCUUAGAGGGUGGCUGCAGAAUUAUUUUAUAAAA_CUAAAGAAAGAAUUUCAAAGGAUUCUAGGGG ......(((((.(((((..........((((((((((((..............)))))))))))).......................(((.....)))...))))).))))). (-22.18 = -21.30 + -0.88)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
