Structure #102182

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	+
Position	65,297,487 - 65,297,605
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.52
Columns	120
Mean single MFE	-45.47
Consensus MFE	-39.28
Combinations/base pair	52 / 37 = 1.41
SCI	0.86
z-score	-3.68
RNA class probability	0.999776

This structure is part of cluster 53790

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.52
 Mean single sequence MFE: -45.47
 Consensus MFE: -39.28
 Energy contribution: -40.59
 Covariance contribution:   1.31
 Mean z-score:  -3.68
 Structure conservation index:   0.86
 SVM decision value:   4.05
 SVM RNA-class probability: 0.999776
 Prediction: RNA

######################################################################

>hg17.chr2/65297487-65297605
AUGGUGUUUCACUGUUGGAACAGCAAGCACUGUCUUAAUUGAGGCUUGGCUCCGGGUGCUGUUUUGGUGUGGGGCCAAGUAUACCUUUGGGCAGUGUUUUGCACUUCUGAGAGUGAAA
......(((((((.(..(((..(((((((((((((........((((((((((..(..((.....))..)))))))))))........)))))))).)))))..)))..).))))))) ( -51.49)
>mm5.chr18/35997173-35997288
AUCGUGUUACACUGUUGGAAGAGUAAACACUGCCUUACUAAGGGUCGGCUCCCAGCACUGUUUUGGUGUCUGGUGCUGAGUACUUUCAGGCAGUAUUGCAUCCCUGAGAGUGGAA
.........((((.(..(..((((((..(((((((....((((.(((((..((((((((.....)))).)))).))))).).)))..))))))).)))).)).)..).))))... ( -40.00)
>rn3.chr18/28207070-28207186
AUUGUGUUACACUGUUGGAAGAGCAAAGGCUGCUUUAGAAGGGUUGGCUCCAAGCACUGUUUUGGUGUUUGGUGCUGAGUACCUUCAGGCAGUGUAUUGCAUCCCUGAGAGUGGAA
.........((((.(..(..(((((((.(((((((..(((((.(..((.(((((((((.....))))))))).))..)...)))))))))))).).)))).)).)..).))))... ( -48.40)
>canFam1.chr11/28125431-28125548
AUGGUGUUACACUGUUGGAAGAGCAAACACUGCCUUUAUUGAGGUCUGGCUCCGAGCACUGUUUUGGUGUUGCAGCUAAGUACUCUUGGGCAGCGUUUUGCACCUCUGAGAGUGGAA
.........((((.(..((.(.((((((.((((((.....(((..((((((.(.((((((.....))))))).)))).))..)))..)))))).).))))).).))..).))))... ( -42.00)
>consensus
AUGGUGUUACACUGUUGGAAGAGCAAACACUGCCUUAAUUAAGGGUUGGCUCCGAGCACUGUUUUGGUGU_UGGUGCUAAGUA__CCUUCAGGCAGUGUUUUGCACCCCUGAGAGUGGAA
.........((((.(..((.(.(((((((((((((........(((((((((((.(((((.....))))).)))))))))))........))))))))).)))).).))..).))))... (-39.28 = -40.59 +   1.31)

[Download RNAz result]

Consensus structure

Secondary structure graph

Secondary structure

[PS | PDF]

Montain plot

Secondary structure

[PS | PDF]

Dotplot

Secondary structure

[PS | PDF]