Structure #102183

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	-
Position	65,297,487 - 65,297,605
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.52
Columns	120
Mean single MFE	-31.4
Consensus MFE	-15.29
Combinations/base pair	35 / 29 = 1.21
SCI	0.49
z-score	-2.79
RNA class probability	0.846907

This structure is part of cluster 53790

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.52
 Mean single sequence MFE: -31.40
 Consensus MFE: -15.29
 Energy contribution: -16.60
 Covariance contribution:   1.31
 Mean z-score:  -2.79
 Structure conservation index:   0.49
 SVM decision value:   0.77
 SVM RNA-class probability: 0.846907
 Prediction: RNA

######################################################################

>hg17.chr2/65297605-65297487
UUUCACUCUCAGAAGUGCAAAACACUGCCCAAAGGUAUACUUGGCCCCACACCAAAACAGCACCCGGAGCCAAGCCUCAAUUAAGACAGUGCUUGCUGUUCCAACAGUGAAACACCAU
(((((((.......((((.......((((....))))...((((.......))))....))))..((((((((((((..........)).)))))..)))))...)))))))...... ( -27.90)
>mm5.chr18/35997288-35997173
UUCCACUCUCAGGGAUGCAAUACUGCCUGAAAGUACUCAGCACCAGACACCAAAACAGUGCUGGGAGCCGACCCUUAGUAAGGCAGUGUUUACUCUUCCAACAGUGUAACACGAU
...((((.....(((...((((((((((..(((...((.((.((((.(((.......)))))))..)).))..)))....))))))))))......)))...))))......... ( -31.80)
>rn3.chr18/28207186-28207070
UUCCACUCUCAGGGAUGCAAUACACUGCCUGAAGGUACUCAGCACCAAACACCAAAACAGUGCUUGGAGCCAACCCUUCUAAAGCAGCCUUUGCUCUUCCAACAGUGUAACACAAU
...((((.....(((.((((....((((..(((((......((.((((.(((.......))).)))).))....)))))....))))...))))...)))...))))......... ( -29.90)
>canFam1.chr11/28125548-28125431
UUCCACUCUCAGAGGUGCAAAACGCUGCCCAAGAGUACUUAGCUGCAACACCAAAACAGUGCUCGGAGCCAGACCUCAAUAAAGGCAGUGUUUGCUCUUCCAACAGUGUAACACCAU
...((((....((((.(((((.(((((((...(((((((....((......))....))))))).(((......)))......)))))))))))).))))....))))......... ( -36.00)
>consensus
UUCCACUCUCAGAGAUGCAAAACACUGCCCAAAAG__UACUCAGCACCA_ACACCAAAACAGUGCUCGGAGCCAACCCUCAAUUAAGGCAGUGUUUGCUCUUCCAACAGUGUAACACCAU
...((((....(((..((((.(((((((((((........)))((.((...(((.......)))...)).))..............))))))))))))..)))....))))......... (-15.29 = -16.60 +   1.31) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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