Structure #102189
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr2 |
| Strand | - |
| Position | 65,297,527 - 65,297,642 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 81.05 |
| Columns | 120 |
| Mean single MFE | -32.27 |
| Consensus MFE | -20.38 |
| Combinations/base pair | 40 / 31 = 1.29 |
| SCI | 0.63 |
| z-score | -2.22 |
| RNA class probability | 0.89667 |
This structure is part of cluster 53790
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.05 Mean single sequence MFE: -32.27 Consensus MFE: -20.38 Energy contribution: -20.69 Covariance contribution: 0.31 Mean z-score: -2.22 Structure conservation index: 0.63 SVM decision value: 0.99 SVM RNA-class probability: 0.896670 Prediction: RNA ###################################################################### >hg17.chr2/65297642-65297527 GUUUGCACUCAGAUUAGGACCGACUCCACAGGAGUCAUUUCACUCUCAGAAGUGCAAAACACUGCCCAAAGGUAUACUUGGCCCCACACCAAAACAGCACCCGGAGCCAAGCCUC .((((((((((((...(((..((((((...))))))..)))..)))..).))))))))....((((....))))..((((((.((.................)).)))))).... ( -30.93) >mm5.chr18/35997326-35997212 GUUUGCACCCAGACCAGGACCAACUCCACAAGGAGUCAUUCCACUCUCAGGGAUGCAAUACUGCCUGAAAGUACUCAGCACCAGACACCAAAACAGUGCUGGGAGCCGACCCUU (((.((..........(((...(((((....)))))...)))(((.(((((.(........).))))).))).((((((((..............)))))))).)).))).... ( -33.54) >rn3.chr18/28207224-28207108 GUUCGCACCUAGACUAGGACCAACUCCACAAGGAGUCAUUCCACUCUCAGGGAUGCAAUACACUGCCUGAAGGUACUCAGCACCAAACACCAAAACAGUGCUUGGAGCCAACCCUU (((.((((((......(((...(((((....)))))...)))....(((((.(((.....)).).)))))))))........((((.(((.......))).)))).)).))).... ( -30.00) >canFam1.chr11/28125588-28125471 GUUUGCACCCAGACUAGGACCAACUCCACAGGAGGAGUUCUUCCACUCUCAGAGGUGCAAAACGCUGCCCAAGAGUACUUAGCUGCAACACCAAAACAGUGCUCGGAGCCAGACCUC .((((((((((((...(((..((((((......))))))..)))..)))..).))))))))..(((.((...(((((((....((......))....))))))))))))........ ( -34.60) >consensus GUUUGCACCCAGACUAGGACCAACUCCACA__AGGAGUCAUUCCACUCUCAGAGAUGCAAAACACUGCCCAAAAG__UACUCAGCACCA_ACACCAAAACAGUGCUCGGAGCCAACCCUC (((((((((((((...(((..((((((......))))))..)))..)))...))))))....(((((.((((........))))...............)))))....))))........ (-20.38 = -20.69 + 0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
