Structure #103351

Summary

Genome/Assembly hg17
Chromosome/Contig chr2
Strand -
Position 77,656,133 - 77,656,266
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 82.96
Columns 133
Mean single MFE -28.68
Consensus MFE -22.19
Combinations/base pair 51 / 38 = 1.34
SCI 0.77
z-score -2.06
RNA class probability 0.912504

This structure is part of cluster 54425

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 133
 Columns: 133
 Strand: +
 Mean pairwise identity:  82.96
 Mean single sequence MFE: -28.68
 Consensus MFE: -22.19
 Energy contribution: -23.00
 Covariance contribution:   0.81
 Mean z-score:  -2.06
 Structure conservation index:   0.77
 SVM decision value:   1.08
 SVM RNA-class probability: 0.912504
 Prediction: RNA

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>hg17.chr2/77656266-77656133
GAUGAUUUAGCAAUAAUAAAAUGGCAGUCAUAACAGGGACUGUUUGUCAGUAUUGCUGUCAUCCCCAAAAGAAAUGAUAUGUAUUCUUGUUAAACUUAUUAAAAAAUAAGUGAUACAAAUAUUUAUAAAUAAA
((((((..(((((((.......(((((((........)))))))......)))))))))))))..............((((.((..((((...(((((((....)))))))...))))..)).))))...... ( -30.62)
>mm5.chr6/69474931-69475064
GAUGACUUGGCAGUAACAUAAUGACAGGCAUGACAGAGCCUGCUUGUCAUCUUUGCUGUCUUCCUCAAAAGGAAAGACAGAAACUCUUGUUAAAUUGACCCAAAACUAAGUGAUGCAAAUAUUUAUGAAUAAA
.((.((((((...(((((..((((((((((.(......).)))))))))).....((((((((((....))).))))))).......)))))..(((...)))..)))))).))................... ( -31.80)
>rn3.chr4/72980191-72980324
GAUGACUUGCUAGUAACAUAAGGACAGGCAUGACAGGGACUGCUUGUCAUCUUUGCUGUCAUCCUCAAAAGAAAGGGCAUAAACUCUUGUUAAAUUGACCCAAAACUAAAUGAUGCAAAUAUUUAUGAAUAAA
....(((....)))..((((((((((((((..........))))))))...(((((.(((((..((....))..(((((..(((....)))....)).)))........))))))))))..))))))...... ( -26.20)
>canFam1.chr17/17991152-17991285
GAUGAUUUAGCAAUAACAUAAUGACAGGCAUAACAGGGACUGUUUGUCAAUGUUGCUGUCAUCCCCAAAAGAAAUAAUGUGUAUUCUUGUUAAACUUAUCCAAAACUAAGUGAUACAAAUAUUUAUAAAUAAA
((((((..((((...((((..(((((((((..........)))))))))))))))))))))))..............((((.((..((((...(((((........)))))...))))..)).))))...... ( -26.10)
>consensus
GAUGACUUAGCAAUAACAUAAUGACAGGCAUAACAGGGACUGCUUGUCAUCUUUGCUGUCAUCCCCAAAAGAAAUGACAUAAACUCUUGUUAAACUGACCCAAAACUAAGUGAUACAAAUAUUUAUAAAUAAA
((((((..(((((((......(((((((((..........))))))))).)))))))))))))..............(((((((..((((...(((((........)))))...))))..)))))))...... (-22.19 = -23.00 +   0.81) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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