Structure #103351
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr2 |
Strand | - |
Position | 77,656,133 - 77,656,266 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 82.96 |
Columns | 133 |
Mean single MFE | -28.68 |
Consensus MFE | -22.19 |
Combinations/base pair | 51 / 38 = 1.34 |
SCI | 0.77 |
z-score | -2.06 |
RNA class probability | 0.912504 |
This structure is part of cluster 54425
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 133 Columns: 133 Strand: + Mean pairwise identity: 82.96 Mean single sequence MFE: -28.68 Consensus MFE: -22.19 Energy contribution: -23.00 Covariance contribution: 0.81 Mean z-score: -2.06 Structure conservation index: 0.77 SVM decision value: 1.08 SVM RNA-class probability: 0.912504 Prediction: RNA ###################################################################### >hg17.chr2/77656266-77656133 GAUGAUUUAGCAAUAAUAAAAUGGCAGUCAUAACAGGGACUGUUUGUCAGUAUUGCUGUCAUCCCCAAAAGAAAUGAUAUGUAUUCUUGUUAAACUUAUUAAAAAAUAAGUGAUACAAAUAUUUAUAAAUAAA ((((((..(((((((.......(((((((........)))))))......)))))))))))))..............((((.((..((((...(((((((....)))))))...))))..)).))))...... ( -30.62) >mm5.chr6/69474931-69475064 GAUGACUUGGCAGUAACAUAAUGACAGGCAUGACAGAGCCUGCUUGUCAUCUUUGCUGUCUUCCUCAAAAGGAAAGACAGAAACUCUUGUUAAAUUGACCCAAAACUAAGUGAUGCAAAUAUUUAUGAAUAAA .((.((((((...(((((..((((((((((.(......).)))))))))).....((((((((((....))).))))))).......)))))..(((...)))..)))))).))................... ( -31.80) >rn3.chr4/72980191-72980324 GAUGACUUGCUAGUAACAUAAGGACAGGCAUGACAGGGACUGCUUGUCAUCUUUGCUGUCAUCCUCAAAAGAAAGGGCAUAAACUCUUGUUAAAUUGACCCAAAACUAAAUGAUGCAAAUAUUUAUGAAUAAA ....(((....)))..((((((((((((((..........))))))))...(((((.(((((..((....))..(((((..(((....)))....)).)))........))))))))))..))))))...... ( -26.20) >canFam1.chr17/17991152-17991285 GAUGAUUUAGCAAUAACAUAAUGACAGGCAUAACAGGGACUGUUUGUCAAUGUUGCUGUCAUCCCCAAAAGAAAUAAUGUGUAUUCUUGUUAAACUUAUCCAAAACUAAGUGAUACAAAUAUUUAUAAAUAAA ((((((..((((...((((..(((((((((..........)))))))))))))))))))))))..............((((.((..((((...(((((........)))))...))))..)).))))...... ( -26.10) >consensus GAUGACUUAGCAAUAACAUAAUGACAGGCAUAACAGGGACUGCUUGUCAUCUUUGCUGUCAUCCCCAAAAGAAAUGACAUAAACUCUUGUUAAACUGACCCAAAACUAAGUGAUACAAAUAUUUAUAAAUAAA ((((((..(((((((......(((((((((..........))))))))).)))))))))))))..............(((((((..((((...(((((........)))))...))))..)))))))...... (-22.19 = -23.00 + 0.81)