Structure #110188
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr2 |
| Strand | - |
| Position | 178,412,531 - 178,412,651 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 83.08 |
| Columns | 120 |
| Mean single MFE | -31.87 |
| Consensus MFE | -20.11 |
| Combinations/base pair | 29 / 23 = 1.26 |
| SCI | 0.63 |
| z-score | -3.17 |
| RNA class probability | 0.98518 |
This structure is part of cluster 58284
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.08 Mean single sequence MFE: -31.87 Consensus MFE: -20.11 Energy contribution: -19.87 Covariance contribution: -0.24 Mean z-score: -3.17 Structure conservation index: 0.63 SVM decision value: 2.00 SVM RNA-class probability: 0.985180 Prediction: RNA ###################################################################### >hg17.chr2/178412651-178412531 AUCCAUUUCCUCUCACAGGAGAGUAACCUCCAUAACUCACUUUAAGCGCUGCCAUUCAUGAGUUAUGGGUCAUUCCCUUUCUAGUGAAAAUAAAUUCUCCCGCACCAUCAGCCAGAGCUG .................(((((((....(((((((((((......((...))......)))))))))))(((((........)))))......)))))))........((((....)))) ( -27.10) >canFam1.chr36/24561230-24561110 AUCCAUUUCCUCACACAGGAGAGUAACCUCCAUAACUCACUUUAAGCGCUGCCAUUCAUGAGUUAUGGGUCAUUCCCUUCCUAGUGAAAAUAAAUUCUCCCGCACCAUCAGCCAGAGCUG .................(((((((....(((((((((((......((...))......)))))))))))(((((........)))))......)))))))........((((....)))) ( -27.10) >mm5.chr2/75962580-75962460 AUCCAUUUCCUCUCACAGGAGAGUAACCUCCAUAACUCACUUUAAGCAUCACCGUUCGUGAGUUAUGGGUCAUUCCUCUCCUAGCGAAAAUAAAUUCUCCCGCACCAUGAGCCUGCACUG ...........((((.(((((((.....((((((((((((....(((......))).))))))))))))......))))))).(((..............)))....))))......... ( -32.64) >rn3.chr3/58633516-58633396 AUCCAUUUCCCCUCGCAGGAGAGUAACCUCCAUAACUCACUUUGAACGUCGACGUUCAUGAGUUAUGGGUCAUUCCUCGCCUAGUGAAAAUAAAUUCUCCCGCACCAUCAGCCUGCACUG ..............((.(((((((....(((((((((((...((((((....)))))))))))))))))(((((........)))))......))))))).))................. ( -35.80) >galGal2.chr7/20894351-20894471 AUUCAUUUCCUCACACGAGAGAAUGACCUCCAUAACUCACUGCAGACUCUGCCACUCGUGAGUUAUGGGUCGUUUUUUUUCUGGUGAAAAUAAAUUUUACAGUGCCAUCGUGUACAGCUG ............((((((((((((((((..((((((((((.((((...)))).....))))))))))))))))))))......((((((.....)))))).......))))))....... ( -36.70) >consensus AUCCAUUUCCUCUCACAGGAGAGUAACCUCCAUAACUCACUUUAAGCGCUGCCAUUCAUGAGUUAUGGGUCAUUCCUUUCCUAGUGAAAAUAAAUUCUCCCGCACCAUCAGCCAGAGCUG .............((((((((((.((..(((((((((((...................)))))))))))...)).))))))).))).................................. (-20.11 = -19.87 + -0.24)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
