Structure #85208

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	45,998,103 - 45,998,218
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	77.98
Columns	120
Mean single MFE	-30.3
Consensus MFE	-14.54
Combinations/base pair	36 / 29 = 1.24
SCI	0.48
z-score	-2.94
RNA class probability	0.947796

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.98
 Mean single sequence MFE: -30.30
 Consensus MFE: -14.54
 Energy contribution: -16.66
 Covariance contribution:   2.13
 Mean z-score:  -2.94
 Structure conservation index:   0.48
 SVM decision value:   1.36
 SVM RNA-class probability: 0.947796
 Prediction: RNA

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>hg17.chr17/45998218-45998103
AACCCCACUUCCAUCCCUCCUCCUUUCCUCCCUCCUGGGAGAGAGAACUAGAGCAUGUUAUCUCCACAAAUGAGUCCUCUGUGUGGGGCUUUAUCUAGAUAGAGCCCUUGCUUAG
.......................(((((((((....))))).))))....(((((.........((((...((....))..))))(((((((((....))))))))).))))).. ( -34.80)
>canFam1.chr9/19146513-19146407
AAACCCACUUCCAUCCCUCCUCCUCUUCUCCCUCCAGGAGAGAGAACCAGAGCAUGUUAUCUGUACAACUGAGUCCUCUAGAGCUUUAUCUAGAGCCCUUGCUUAG
......................((((.((((.....)))))))).....((((.(((.......)))...(((..(((((((......)))))))..))))))).. ( -25.90)
>mm5.chr11/27508509-27508624
ACCUCUCUACCAUCCCUCCCCCCUUCUCUCUUUCCUGGGAGAGGGAAAUAGAGCAUGCUAUAUCCACAAAUGAGUCUUCUCCAUAGGUUUUUAUCUAGAUAGGGCUUUUGCCUAG
.....................(((((((((......)))))))))...(((.(((.(((.((((.......(((....)))..(((((....))))))))).)))...)))))). ( -29.80)
>rn3.chr10/27610714-27610832
ACCUCUCUACCAUCCCUCCCCCUCCUCUCUUUCCUGGGAAAGAGAGGGAAAUAGAGCAUGUUAUAUCCACAAAUGAGUCUUCUCCAUAGGUUUUUAUCUAGAUAGAGCUUUUGCCUAG
......................(((((((((((....)))))))))))...(((.(((.(((.((((.......(((....)))..(((((....))))))))).)))...)))))). ( -30.70)
>consensus
_ACCCCACUACCAUCCCUCCCCCUCUC_CUCCCUCCUGGGA____GAGAGAAAUAGAGCAUGUUAUAUCCACAAAUGAGUCCUCUCCAUAGGGCUUUAUCUAGAUAGAGCCCUUGCCUAG
.............((((((.((((.............))))....))))))....(((((.(((.((((.......(((((((......)))))))......)))).)))...))))).. (-14.54 = -16.66 +   2.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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